| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0019 |
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| Symbol | |
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| ID | 3932455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 17961 |
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| End bp | 18653 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637902360 |
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| Product | hypothetical protein |
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| Protein accession | YP_507961 |
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| Protein GI | 89052510 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain
[TIGR03370] variant PEP-CTERM putative exosortase signal, Roseobacter type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000525215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATTT TCAAAAATTT AGGCGGCGCC ATTCTTGCGT TGGGATTCGC GGCCGGTGTC
GCACATGCGA ATGTAATCAA CTTTGAGACC GACGAGGCGG GCTTCACCGC AGTGAACACG
GGCTTGAATG GCGGCGCGCC CGTCGGGCCC TATGCTGGCC CAGGCGGATC GACCTTCACC
ATTGACGCGG ATACGTTCTC GGGATCCGTC CCGGGTGACA TCACGCTGAA CGGCGAACGG
CGCATCAACA TCACGCAGGG TGTCGAAGGT CTTGGCGTCA ATAACCGGAA TTGCGTCTGG
TTCGTTTGCG ATGGCGGACA GGTCGATGGG TTCGGCTCGA ACGACATTCT CATCTTTACG
TTTGATCGCA TGATGTCGCT GTCGCGGATC ATCTTCGAGA ATGTGGGCCG CCGTGATGAT
TTCGTCCTCT ATGTACCGGG TGCAAACCCC GAGGCCGAGC AGTTCGACAT CGTCAACCCG
CTTCCGTTCC CGGATACGAA CGGCGATGAA GGGTTCTTCG ACTTTGGCGG CCTGCGAGTG
ACGTCCTTCG GGATCGGCGC TTACGGCAAC AATGACAGCT TCCGGGTGTC CCGGATCGAG
ATTGCGCCGG TTCCACTGCC CGCAGGCGCG GTCCTGCTGC TGACCGGGCT TGGCGCGCTG
GCGCTGCGTC GGCGTCAAAA GACCGATACC TGA
|
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| Protein sequence | MNIFKNLGGA ILALGFAAGV AHANVINFET DEAGFTAVNT GLNGGAPVGP YAGPGGSTFT
IDADTFSGSV PGDITLNGER RINITQGVEG LGVNNRNCVW FVCDGGQVDG FGSNDILIFT
FDRMMSLSRI IFENVGRRDD FVLYVPGANP EAEQFDIVNP LPFPDTNGDE GFFDFGGLRV
TSFGIGAYGN NDSFRVSRIE IAPVPLPAGA VLLLTGLGAL ALRRRQKTDT
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