| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH_0750 |
|---|
| Symbol | topA |
|---|
| ID | 3927721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ehrlichia chaffeensis str. Arkansas |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007799 |
|---|
| Strand | - |
|---|
| Start bp | 754252 |
|---|
| End bp | 756714 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 820 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 637901868 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_507548 |
|---|
| Protein GI | 88657600 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAA TTATAGTAGA ATCCCCATCT AAAGCAAAAA CTATAAGTAA ATATTTAGGT
AGCAAGTATA AAGTTGTTGC ATCATTTGGG CATATTAGGG ATTTTCCAGC AAAAAGTGGT
TCTGTTGATC CGGATAAAGA TTTCGCTATG ACTTATGAAA TTATTAGTAA GTCAGAAAAA
TATGTAAATA AGTTAATTCA GGTAGCTAAT AAGGAAACAC AAGGAATTTA TCTTGCAACT
GATCCAGATC GTGAGGGTGA AGCAATAGCA TGGCATATTA TAGAAGTATT GAAGGAAAAT
AATGCTATTG ATGATAATGT TGTAATTAAT AGAATGGTTT TTAATGAGGT AACTAAAAGT
GCTATTCTTG AATCTATAAA ACGCCCAAGA AGTATCAATA TGGATCTTGT GTATGCACAG
CAAGCACGTA GAGCATTAGA TTATTTAGTT GGTTTTACGT TATCTCCTTT ATTATGGAGA
AAACTTCCGG GTAGTAAATC TGCTGGTAGA GTTCAATCTG TTGCTTTAAG GTTAATATGT
GACAGGGAAA GTGATATTGA AAAGTTCATT ACACAAGAAT ATTGGGATAT TGAGGCTAAA
TGTTGCAATA CAGAAGGTAA GCAGTTTTCT GCATTTTTAA GTTGTTATGC TGGTAAAAAA
TTAGAGAAGT TTGATATTAA GAATGAAGAA GATGCACAAA AGTTGTCAGA AGAAGTAAGA
TCTCGTAGTT ATTCTGTTAT AAATGTTGAG AAAAAGCATA CAAAGCGTAA TCCTTATCCT
CCTTTTATTA CATCAAGTTT ACAGCAAGAA GCATCAACAA AGCTTGGATT TACTGCAAAA
AATACTATGC TTATTGCTCA AAAACTGTAT GAAGGAATTG ATGTTGGAGG GGAAATTGTT
GGACTCATTA CTTATATGAG GACGGATGGA TTTTATATTG CAGATGAAGC ATTAGAGCAT
ATTAGGAGTA TCATTGTTTC TATGTTTGGT AAAGAATATT TACCGGAATC TGCTCGCAAG
TATGTGAAAA AGGTAAAAAA TGCTCAAGAA GCACATGAAG CAATTAGACC AACGAATATT
ACAATTACTC CTGGTAGTTT ATCAAATTAT CTCACTCCAG AGCAACTCAA GCTTTATGAT
CTTATATGGA AAAGGACTGT TGCAAGTCAG ATGAATTCTG CTGTAATTGA TCAGGTTATA
GTAGAATTAG GGTCGCTGGA TAAAGTAGTA ACTTTGCGAG CCACAGGTTC TTCCTTGTTT
TTTGATGGAT TTTATAAGGT GTATGGTCAT GGTGAGGATG ATGATAGTAA AAATAATATG
CTACCGTTAC TTCAAAAAAA TGATAAATGC CCTTTAGATG AAGTGGTACC TCATCAACAT
TTTACTAATC CTCCTGCTAG ATATAATGAA GCAAGTTTAG TGAAGAAAAT GGAGGAAATA
GGGATAGGAA GGCCTTCTAC TTATGCTTCT ATTATTTCTG TATTGCAAGA TAGACAGTAT
GTTATACTAA ATCAAAAAAG ATTTTTTCCA ACAGAGAGAG GTAGAATAGT AAATGTTTTT
CTTGTTAACT TTTTTAGTCG CTATGTAGAA TATGATTTTA CTGCTGACCT TGAAGAAAAG
TTGGATTTAA TCTCTAATGG GAAGATTAAT TGGAAGGAAG TACTACATCA ATTCTGGTTT
CTGTTTATTG ATAATGTTAA TTCAGTAAAA AAACTAGAAT TTACTGAAGT ATTAAAAGTT
ATTAGTTGTG AGATGGAAAA TTATATTTTT TCTTCTGATA AATCTGAATC TAGTAGAGTA
TGTCCTGTAT GTAATGATGG AACATTAGAG CTTAATATTA GTAAGAATGG TATTTTTTTA
GGATGTTCTA AATATCCAGA GTGTAAGTAT ACAAAAAATG TTGGAAGTGG TATTGTTGAT
GATACAGACA ATACACAATA TCCTAAAATA TTAGGTATTG ATGCTGCAAC AGGACAAGAA
ATATATCTTA AAAAAGGTCC GTATGGTCTC TATTTACAGA TTGGTAATGA TAAAAGTGGT
AAACGTGCAG CTATTCCAAA AAATATAGAT GCTAATTTAT TAGATTTGCA AATGGCAGAA
AAAATATTAA GTTTACCTAT AAGCTTAGGT ACTCATCCGG ATACTGGTCA AGAAATTAAG
TTAGGACTTG GTAAGTTTGG TGCATACATA TTGTATGGTG GTAAGTATTT TTCAGTAAAA
AATGAGCATA ATTTTTTAGA TATTAGCATT GAAAACGCTA TTAATATTAT TGCGAATAAT
TCTACAAGTG GGGTTATAAA GTCTCTGGGT ATCACTGAAG ATAATAAAGA AGTATTCTTA
TGTAAAGGAA GATATGGATT CTATTTAAAA TATGATAAGT TGAATGTTGC TTTGAAGAAA
GATACAGATA TTGAACAAAT ATCTTTATCG GATGCTATTA AGCTCATATC AGAAAAATTA
TAA
|
|---|
| Protein sequence | MSLIIVESPS KAKTISKYLG SKYKVVASFG HIRDFPAKSG SVDPDKDFAM TYEIISKSEK
YVNKLIQVAN KETQGIYLAT DPDREGEAIA WHIIEVLKEN NAIDDNVVIN RMVFNEVTKS
AILESIKRPR SINMDLVYAQ QARRALDYLV GFTLSPLLWR KLPGSKSAGR VQSVALRLIC
DRESDIEKFI TQEYWDIEAK CCNTEGKQFS AFLSCYAGKK LEKFDIKNEE DAQKLSEEVR
SRSYSVINVE KKHTKRNPYP PFITSSLQQE ASTKLGFTAK NTMLIAQKLY EGIDVGGEIV
GLITYMRTDG FYIADEALEH IRSIIVSMFG KEYLPESARK YVKKVKNAQE AHEAIRPTNI
TITPGSLSNY LTPEQLKLYD LIWKRTVASQ MNSAVIDQVI VELGSLDKVV TLRATGSSLF
FDGFYKVYGH GEDDDSKNNM LPLLQKNDKC PLDEVVPHQH FTNPPARYNE ASLVKKMEEI
GIGRPSTYAS IISVLQDRQY VILNQKRFFP TERGRIVNVF LVNFFSRYVE YDFTADLEEK
LDLISNGKIN WKEVLHQFWF LFIDNVNSVK KLEFTEVLKV ISCEMENYIF SSDKSESSRV
CPVCNDGTLE LNISKNGIFL GCSKYPECKY TKNVGSGIVD DTDNTQYPKI LGIDAATGQE
IYLKKGPYGL YLQIGNDKSG KRAAIPKNID ANLLDLQMAE KILSLPISLG THPDTGQEIK
LGLGKFGAYI LYGGKYFSVK NEHNFLDISI ENAINIIANN STSGVIKSLG ITEDNKEVFL
CKGRYGFYLK YDKLNVALKK DTDIEQISLS DAIKLISEKL
|
|---|
| |