Gene ECH_0044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH_0044 
SymbolvirB8-1 
ID3927153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEhrlichia chaffeensis str. Arkansas 
KingdomBacteria 
Replicon accessionNC_007799 
Strand
Start bp41465 
End bp42178 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content31% 
IMG OID637901168 
Producttype IV secretion system protein VirB8 
Protein accessionYP_506876 
Protein GI88657917 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3736] Type IV secretory pathway, component VirB8 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.677049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACGTA TGTTTAATAA ATTCAGAAAG AAGAATAATA AAAATGATAA TAACAAACTA 
TCAAACGCAA ATTTAGAAAC AACATACAGT TGGCACGTCA GTCGTTATAA CTCAGTTGTT
ATACAAAGAA ATATGCTACT GTTTTTTACC ATGCTAGCAT TAAGCGCAGT AGGAATCAGC
GTTTTCGTCA TTTTTAATAT AAGCAAAAAC AGAACTATTG AACCATTTGT AGTAGAAATA
GAGAAAAAAT CTGGAATCAC AACTTTAGTA AACCCTGTAT CAGTCAAACA ATACTCAGCA
GACGAAGTTT TAAATAATCA TTTTATAATA GAATATGTAA GATCTAGAGA GCTTTTTGAC
CCTAATAATT TTCAATATAA CTATTACACA AAAGTTCGTC TATTTTCTAA CCAAACAACA
TACAGTGAGT TCCGTAACTG GATAAGGCTA AGTAATCCTG CAAGTCCTTT AAACTTATAT
GCAAATGTAA CATCAGGATA TCTTAAAATC AGATCTTTAC AGCATTTGCG TCCAGGAAGT
GTACAAATCA GGTTCTCCTT AGAATTTAAC CATCCAAGTG GCATAATAAA AAAAGATAGA
ATAGCTACAT TATCATTTCA ATACGTAACT CTTGAAATGA ATGAACAAGA ACGGCAAATT
AATCCTTTAG GATTCCAGAT AACTTACTAT AGGGCAGATG ATGAATTTCT ATAA
 
Protein sequence
MIRMFNKFRK KNNKNDNNKL SNANLETTYS WHVSRYNSVV IQRNMLLFFT MLALSAVGIS 
VFVIFNISKN RTIEPFVVEI EKKSGITTLV NPVSVKQYSA DEVLNNHFII EYVRSRELFD
PNNFQYNYYT KVRLFSNQTT YSEFRNWIRL SNPASPLNLY ANVTSGYLKI RSLQHLRPGS
VQIRFSLEFN HPSGIIKKDR IATLSFQYVT LEMNEQERQI NPLGFQITYY RADDEFL