| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0739 |
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| Symbol | virD4 |
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| ID | 3931944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 658571 |
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| End bp | 660496 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637900895 |
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| Product | type IV secretion system component VirD4 |
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| Protein accession | YP_506615 |
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| Protein GI | 88608007 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACAGC TTAGGAATAT TATAACGATA TTTTTTCTTC TGGCGTTCAT TTTTGCCTTG
GCCCTTTACA TGTCAGCGGC TATTTTTGTG GTTGCAGTTT GGGGAATAGA ACACCTCAAT
TTCCGTGATT TGCAACCATC TTTGGACGGG TTTCCTACAC GTCTTTGGCC TACAATTTTT
GTCTATATAA GTGATCTTTT CAATAATTGG GATGCTTGGG CCCCAGCTGT AAAGATAAAA
CTTGCTGTCT CGTTAGGCAT TCCGTTTGGA ATACTCGGAG TCGTTTTTTA TATGCTCCGT
GCACCGATTA TGGAGTGGCG CCCATTCAAG AAGAAAGAAT CTGTGCACGG TGATGCAAGG
TGGGCAACAG AAAGGGAAAT AAGGAAAATC GGGCTTAGAA GTCGTAAAGG GATACTGCTT
GGTAAAGATA AGAAAGGTTT CCTCATTGCA GGGGGGTTTC AACACGCTTT ACTGTTCGCT
CCAACTGGTT CTGGGAAGGG TGTTGGGTTT GTTATCCCAA ATCTTCTCTT CTGGGAAGAT
TCTGTTGTTG TTCACGATAT CAAACTTGAG AACTTCACCT TAACTAGCGG TTATAGGAAA
AAGATGGGTC AGAAGGTCTA TTGTTGGAGT CCAGCTGATC CAGATGGTAA AAGTCACTGC
TATAATCCGT TGGATTGGGT TAGTTCAAAG CCGGGGCAGA TGGTAGATGA TGTTCAGAAA
ATCGCTAACC TCCTAATGCC CGAACAAGAT TTCTGGGTCA ATGAAGCCCG AAGTCTTTTT
CTGGGGGTAG TACTGTACAT TCTTGCGGTA CCAGAAAAGG TAAAGTCCTT TGGAGAGGTG
GTAAGGGTGA TGAGAAGCGA TGATGTTACG TATAGTCTCG CTGTTGCGTT AGATACAATG
GGTAAAAAGA TTCACCCAGT TGCCTATATG AACATTGCTG CTTTTCTTCA AAAGGCAGAC
AAAGAAAGAT CTGGTGTGAT ATCGACAATG AACTCCTCGC TCGAATTATG GGCAAACCCA
CTTATTGATA CCACGACGGC TACTAGTGAC TTTAATTTTA TGAAGTTCAA AAGAGAACTT
ACGACGGTGT ATGTGGGCCT CACACCAGAC AACTTGACGA GATTACAGCC GCTTATGCAG
GTTTTTTATC AACAAGCAAC AGAGTTTTTG TGTAGGCATC TTCCACAAAA AGACGAACCA
TATGGTGTTT TGTTTATGAT GGACGAGTTT CCTACCCTTG GTGAGATGGA GCAGTTTAAA
ACTGGTATTG CATATTTTCG TGGATATAAC GTACGTCTGT TTCTTATCAT CCAAGATACA
GAGCAGCTAA AAGGTATCTA CGAGGAAGCA GGGATGAACT CTTTTCTCTC GAACTCTACC
TACAGAATTA CTTTTGCTGC AAACAACATA GAAACGGCAA ATTTAATTTC GCAGTTGGTT
GGTAATAAGA CAGTTGCACA GGAATCGCTT AACAAACCGA AGTTTCTTGA CTTGAATCCT
GCATCGAGGT CGCTGCATAT TTCCGAGACT CAGCGTGCGC TTCTGTTGCC TCAGGAGGTG
ATAATGTTGC CGCGTGACCA GCAGATCCTA TTGATTGAAT CTACTTATCC TATCAAATCA
AAAAAGATAC GGTATTTCGA AGATAGTTTT TTCACGAAAA AAATCCTCGA TCCTATTTCT
ATCCCGACCC AGGAACCATT TGATCCCAAA AAATTTGAAG AAAAGATGCG TAAGGAAAGG
GAGGCTAAGG AATTAGAAGA GAATGCTCCA TTGGCTATAG ATGAAGATCA AGCGCTTCTT
GAAGACGAGT CTCTTTTGGA TGATTCCGAT TATGAAGATG GAGACTTTGA GGATCTAGAT
GAAGAAGAGG ATCTGTCCGA TTTTTTAGAT GACACGGACG AAGAGAACGA AGAAAACATG
GTATGA
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| Protein sequence | MRQLRNIITI FFLLAFIFAL ALYMSAAIFV VAVWGIEHLN FRDLQPSLDG FPTRLWPTIF
VYISDLFNNW DAWAPAVKIK LAVSLGIPFG ILGVVFYMLR APIMEWRPFK KKESVHGDAR
WATEREIRKI GLRSRKGILL GKDKKGFLIA GGFQHALLFA PTGSGKGVGF VIPNLLFWED
SVVVHDIKLE NFTLTSGYRK KMGQKVYCWS PADPDGKSHC YNPLDWVSSK PGQMVDDVQK
IANLLMPEQD FWVNEARSLF LGVVLYILAV PEKVKSFGEV VRVMRSDDVT YSLAVALDTM
GKKIHPVAYM NIAAFLQKAD KERSGVISTM NSSLELWANP LIDTTTATSD FNFMKFKREL
TTVYVGLTPD NLTRLQPLMQ VFYQQATEFL CRHLPQKDEP YGVLFMMDEF PTLGEMEQFK
TGIAYFRGYN VRLFLIIQDT EQLKGIYEEA GMNSFLSNST YRITFAANNI ETANLISQLV
GNKTVAQESL NKPKFLDLNP ASRSLHISET QRALLLPQEV IMLPRDQQIL LIESTYPIKS
KKIRYFEDSF FTKKILDPIS IPTQEPFDPK KFEEKMRKER EAKELEENAP LAIDEDQALL
EDESLLDDSD YEDGDFEDLD EEEDLSDFLD DTDEENEENM V
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