| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0627 |
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| Symbol | secD |
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| ID | 3931608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | + |
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| Start bp | 548627 |
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| End bp | 550135 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637900783 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_506506 |
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| Protein GI | 88608870 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.57035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTCGT TGCGCGTAAA GTGTTTTTTT CTGTTGTTTC TTTTTCTGGT TTCTGCCTTC
GTTGTTTGGG GTAATTTTTC TTCTGGATCA AATAAGAAAA TTAATCCTGG ATTAGATTTG
CGCGGGGGTG TAAGCATTAT AATGTCTATA AATCGCACCG GGTACATTCA AGAAAAACTG
CGCAGACTTG TTTCTGAAAT CCTAGAATTT GCAAAAGAGA AAGGTATTAA AATAAAAAAA
ATTGGGATTG ATGAGTCAAA CCAAATAATT TCAATCTCAC TTGAACAGTC GGAAGAAAAC
AATATTGCGG TTATAAGGGA TTTTTTTAAA ACTTCTGACG AAATAGTATT TGATAGCATC
GATCAGAAAC GTGCATATAT GCAACTTTCG TACTCCGAGC GCTACCTTAA CGAAATAGAT
AAGAAATTGC TTGAAGATTC CATAAATAAC CTTAGGAGAC GAGTAGATGA GTTTGGTGTA
AGGGAAACAT TGATTTATTC GCTCGGTGGG GACCGTATTG CAATAGAAGT CCCGGGTTTG
CATGATCCAG AAGAGTTAGT GACATTGCTT GGTAAAACAG CGAAACTGAG TTTCCATATG
GTTGTAAATG ATACTGCAAC TATCCTGGGC AAATTCTTTT TGAAAGATAA ACTTGGCAGG
AACCTACCCC TTGAAAGGAC TCCCTCTCTT ACTGGGGATC TCCTGGACGA CGCTAGTGTT
GCATTTAGTC AAAGGGGTGT GCCAGTAGTG CGATTTAAAT TCAATGCCTA TGGCACAAAA
AAACTAGAAC AACTATCAAA GGCTAATGTA GGGAGAGCTA TGGCAATAGT ACTGGATGAT
CTTATTTTGA CTGCACCGGT GATTCGTGAT CCAATAATTA ATGGCCGGGG TGAAATATCC
GGCAATTTCG ATGTTAAGGA AGCAAAAGAA CTTGCACTAC TGCTCAAATC TGGTTCTTTA
CCTGCAGAAC TTACGGTAAT AGAACAGAGA GCCATTGGAC CTTCACTAGG CGCAGAGGCA
ATACTTTTGG GGAAAAGAGC TAGCCTCCTT GCAATGCTAT TGGTAGTAAC ATTCATGTTA
TTTGGGTACG GTTGGTATGG CGTAGCTGCA ACTATAGCAT TAATAGTAAA TCTGACACTA
CTGGTAGCAA GTTTGACATT ACTCGAAGCG ACACTCACTC TTCCAGGAAT CGCTGGGTTG
ATACTAACAA TAGGCATGGC AGTCGATGCA AACGTACTTA TTTTTGAGCG TATGCGCGAA
GAATTCAAAA GGACAGGTGT CCTGAGAAAT TCATTAATGA ATGGCTTTGA ACATGCAAAG
GCAACAATTT TTGACGCGAA TATTACCACA ATACTTGCTG CGCTTATGAT GATTTTCATT
GGTTCTGGTC CAATCAGAAG CTTTGCCGTT ACACTTTCCC TCGGAATCAT CACTTCAGTT
TTTTCATCAA TTTTTGTGAC AAGAGTATTG TTAGAAGTAT TTGTGTTACC CAAGAAACCA
TCTAGGTAG
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| Protein sequence | MRSLRVKCFF LLFLFLVSAF VVWGNFSSGS NKKINPGLDL RGGVSIIMSI NRTGYIQEKL
RRLVSEILEF AKEKGIKIKK IGIDESNQII SISLEQSEEN NIAVIRDFFK TSDEIVFDSI
DQKRAYMQLS YSERYLNEID KKLLEDSINN LRRRVDEFGV RETLIYSLGG DRIAIEVPGL
HDPEELVTLL GKTAKLSFHM VVNDTATILG KFFLKDKLGR NLPLERTPSL TGDLLDDASV
AFSQRGVPVV RFKFNAYGTK KLEQLSKANV GRAMAIVLDD LILTAPVIRD PIINGRGEIS
GNFDVKEAKE LALLLKSGSL PAELTVIEQR AIGPSLGAEA ILLGKRASLL AMLLVVTFML
FGYGWYGVAA TIALIVNLTL LVASLTLLEA TLTLPGIAGL ILTIGMAVDA NVLIFERMRE
EFKRTGVLRN SLMNGFEHAK ATIFDANITT ILAALMMIFI GSGPIRSFAV TLSLGIITSV
FSSIFVTRVL LEVFVLPKKP SR
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