| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0622 |
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| Symbol | ctaD |
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| ID | 3931475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | + |
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| Start bp | 543552 |
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| End bp | 545111 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637900778 |
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| Product | cytochrome c oxidase, subunit I |
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| Protein accession | YP_506501 |
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| Protein GI | 88608253 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000132617 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAC ATTCAGAGGT CCCTAGCGGC ATAAGGCGTT GGCTTTTTTC AACAAATCAT
AAAGACATAG GCACTTTGTA CATTATTCTT TCTGTAGCTG GGGGAATTGT AGGTGGCCTT
TTCTCGTTGA TGCTACGTGC ACAACTTGCA CACCTAGATG TCTTTATGGG CAACTATCAA
CTCTACAATG TATCTATAAC TGCTCATGCG GCGGTTATGG TGTTCTTCAT GCTTATGCCA
GCACTCATAG CTGGATTTGG AAACTGGTTC GTTCCACTTA TGATAGGAGC ACCAGACATG
TGTTTTCCGA GGCTCAATAA CATCAGCTTT TGGATACTTT TCTTCTCTCT GGTGATTATC
GTCATGTCCG CGCTTATTGG CGAAGGACCT GGTACAGGTT GGACGTTCTA TCCGCCACTC
GCGGGAATTC ATTTTCATCC TGATGTATCC ATTGATTTAG CAATTTTCGG TTTACATTTG
GCTGGTATTT CATCAATTCT CGGGGCCATT AACTTTGTCG CAACTATATT GAACATGCGC
GCACCTGGTA TGACATTGTT CAAGATGCCA CTTTTTGTAT GGTCTATTTT TGTGACATCT
ATACTGGTCC TTATAGTAAT GCCGGTTCTG GCTGGCGCTC TTATGATGCT GCTCACCGAC
CGTAATTTGG GTACAGCTTT TTTTGAAGTC GCAGGTGGTG GTGATCCACT TCTTTTTCAA
CACTTGTTCT GGTTCTTTGG TCACCCTGAA GTTTATATTA TCATCCTTCC TGCCTTTGGT
ATTGTTAGTG AAGTTGTGTC TACCTTCTCG CAAAAGCCGG TTTTTGGGTA CAAAGGTATG
GTTGCTGCAA TGGCAATAAT CGGCATAATC GGTTGTTTCG TGTGGGCTCA CCACATGTTT
ATTACTGGTA TTAACTTCAA TGCTCTTGCC TATTTCACCG TTGCAACAAT GCTAGTTGGC
GTTCCAACAG GCATAAAAGT CTTTAGTTGG ATAGCAACAA TGTGGGGTGG TTCTATAGAT
CTTAAAGCAC CTATGCTTTT TGCTATAGGC TTCATGTTCT TGTTTGTGGT CGGTGGCGTT
ACGGGTATTG CACTTTCGAA TTCTGCGCTA GATAAGGCTC TACACGACAC ATACTATGTT
GTTGGACACT TTCACTATGT GATGTCGATC GCAGCGCTGT TTGTTGTATA CAGCGCTTTC
TATTACTGGA TTGGTAAAAT TTCAGGGAAA CAGTACAACG AGTGCTTTGC TAAAATCCAT
TTTTGGATTA CGCTCGTTAG CGTAAATATA ACATTCCTAC CACAGCACTT TTTAGGTTTA
GCAGGTATGC CAAGAAGAAT ACCCGACTAT CCGGATGCCT TCATTCCATG GAACTATGTC
TCTTCCTTTG GCGCAGCACT TTCGTTTGGA TCGGCGTTAT TTTTTGTGTT TATAGTCTTT
CATACACTCT GTAAGGGGAA AAAATGTGAA GCTAATCCTT GGGGTGGAAA GACTCTAGAA
TGGACTTTGT CATCCCCTCC TCCGTTCCAT TCGTTTGAAA AGCAACCTGT GGTAGAATAG
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| Protein sequence | MNKHSEVPSG IRRWLFSTNH KDIGTLYIIL SVAGGIVGGL FSLMLRAQLA HLDVFMGNYQ
LYNVSITAHA AVMVFFMLMP ALIAGFGNWF VPLMIGAPDM CFPRLNNISF WILFFSLVII
VMSALIGEGP GTGWTFYPPL AGIHFHPDVS IDLAIFGLHL AGISSILGAI NFVATILNMR
APGMTLFKMP LFVWSIFVTS ILVLIVMPVL AGALMMLLTD RNLGTAFFEV AGGGDPLLFQ
HLFWFFGHPE VYIIILPAFG IVSEVVSTFS QKPVFGYKGM VAAMAIIGII GCFVWAHHMF
ITGINFNALA YFTVATMLVG VPTGIKVFSW IATMWGGSID LKAPMLFAIG FMFLFVVGGV
TGIALSNSAL DKALHDTYYV VGHFHYVMSI AALFVVYSAF YYWIGKISGK QYNECFAKIH
FWITLVSVNI TFLPQHFLGL AGMPRRIPDY PDAFIPWNYV SSFGAALSFG SALFFVFIVF
HTLCKGKKCE ANPWGGKTLE WTLSSPPPFH SFEKQPVVE
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