Gene NSE_0392 details

Gene Information

• Locus tag: NSE_0392
• Symbol: def
• ID: 3931718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Neorickettsia sennetsu str. Miyayama
• Kingdom: Bacteria
• Replicon accession: NC_007798
• Strand: +
• Start bp: 320139
• End bp: 320699
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637900548
• Product: peptide deformylase
• Protein accession: YP_506280
• Protein GI: 88608268
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTAC TTGCACTAAT CATAGAGCCT GACCCACTGT TGCATGAAGT TTCAGAAGCT 
GTGGCTGGTT TATCAGATGA AAAAAGGGTG TTTCTCGATG ATATGCTGGA GACGATGTAC 
CACTGTGGGG GTATAGGGCT GGCTGCAGTT CAAGTGGGTG TACTTGAGAG AATTATTGTT 
GTTGATGTTC CTGTGGGTAA AGAGTGGCAT TCAAGTCCTC TTAATCATGT AGGATACAAA 
AGCTCAGGAG GTCCGTACTA TTTTGTTAAC CCCGAAATCA TAGAATTCTC ACAGAACTTG 
GTTCCTGCCG ATGAAGGATG TCTTTCACTT CCAGAACAGC ATTACGAGAT AATACGCCCG 
GATGCGGTGG TAGTTAAATA TCTGAACTAT GATGGAGAAG AGTGCTTACT CAAGGCAAAT 
GGTTGGCTGG CGCGCTGTAT ACAACATGAG ATGGATCACC TGAATGGAAG ATTATACGTG 
TCGCATCTGT CGAAACTAAA GCATGATCTC GCAATAAAGA AGGCAGCTGA AATAAAGAAA 
CGGCACTCTG AAGCAGACTG A 

 

Protein sequence

MALLALIIEP DPLLHEVSEA VAGLSDEKRV FLDDMLETMY HCGGIGLAAV QVGVLERIIV 
VDVPVGKEWH SSPLNHVGYK SSGGPYYFVN PEIIEFSQNL VPADEGCLSL PEQHYEIIRP 
DAVVVKYLNY DGEECLLKAN GWLARCIQHE MDHLNGRLYV SHLSKLKHDL AIKKAAEIKK 
RHSEAD