Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NSE_0376 |
Symbol | sdhA |
ID | 3931671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Neorickettsia sennetsu str. Miyayama |
Kingdom | Bacteria |
Replicon accession | NC_007798 |
Strand | + |
Start bp | 309273 |
End bp | 311066 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637900532 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_506265 |
Protein GI | 88608201 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTCTCA GTAGTTACCC AATTGTTGAA CATGAATATG ATGTTGTCGT TGTAGGGGCT GGTGGTTCTG GGCTCAGGGC TACTTTGGGT ATGGCGAGTC AGGGTTTGAA GGTTGCATGT CTTTCTAAGG TCTTTCCAAC TAGGAGTCAT ACCGTAGCGG CTCAAGGAGG AATCAGTGCT GCATTGGGGA ATATCAGTGA AGATGATTGG AGATGGCACG CCTATGATAC TGTCAAGGGT TCTGATTGGC TTGGTGATCA GGATGCAATT GAATACATGT GTAAAAATGC TTCCAGTTCA GTAATAGAAT TAGAGAATTT CGGTGTGCCA TTTTCACGGA CGTCTGAAGG TAAAATATAT CAGCGTCCAT TTGGTGGTAT GACGACGCAT TATGGGAAGG GTCGTGCTAT TCGAACATGT GCTGCTGAGG ATAAAACAGG CCACGCCATA CTACACGCTC TTTATCAACA GTCTATAAAG CTGGATACGG AATTTTTTGT GGAATATATA GTCCTTGATT TACTCATGGA TGATGAAGGT TGTAAGGGAG TCATTGCTTG GGATCTCAAA GATGGCTCAT TACATAGGTT CAGAGCTCAT ATTGTGGTGA TAGCAACTGG TGGCTACGGT CGTATTTACT TTTCAGCCAC AGGTGCGCAT ACCTGTACGG GCGATGGAAA TGCATTTGTC CTGAGAGCTG GTTTGCCGCT CCAAGACATG GAATTTGTGC AATTTCACCC AACCGGTATT TATGGAGCTG GTTGTTTAAT CAGTGAGGCG GTTCGTGGTG AGGGTGGCTA TCTTATAAAT TCAGAAGGGG AAAGGTTTAT GGCTAAGTAT GCTCCTTCTG CAATAGATCT TGCGTCCAGA GATGTTGTGA GTCGTGCAAT CACTATGGAG ATCCGTGCTG GTAGAGGTGT TGGCCCAAAG AAAGATCACA TTTACCTTCA AGTTTCACAT TTAGGTTCTA AGGTTATAGA ACAACGGCTT CCGGGTATAA GCGAAACTGC ACGTATCTTT GCAAATGTGG ATGTGACGAA AGAGCCTATT CCGGTACTTC CGACTGTCCA CTATAACATG GGAGGGATTC CAGCAAATTA TCATGGGGAG GTCCTTACCG TCGATGATGA GAATGTAGAG AAAGTTGTTC CAGGTTTGAT GGCTATAGGG GAAGCTGCTT GTATTTCAGT ACATGGCGCG AATAGACTTG GCTCAAATTC TTTACTGGAT CTTGTCGTTT TTGGTAGGAC GGCTGCTATT AGGGCCAGAG AGGTCATAAA GGCCAATACG AAGCACTCTC CTATCGATAA GGAGTTGACA GAGCGGGTTC TGGCGCGCTT CGATAGGTTC CGTTACGCAG ACGGTGGGCT TCCTACAGCT GTGCTAAGAA GAAAAATGCA ATTGATAATG CAGGAGCATG CTGCCGTTTT TAGGACTCAG GAGGTCCTGG ATGAAGGGTG TAAAAAAATG CGGGAGTTCC TCCGTGAAAT GGATGAGATC AATGTAACTG ACCGTTCACT TGTCTGGAAT ACTGACCTCG TAGAAACGCT TGAGCTCGAT AATATGGTGA GCCAGGCTGT TGCAACAATA GAGTCAGCTG CAAATAGGAA AGAAAGTAGA GGCAGCCATG CTAGAGAAGA TTATCCTGAA AGAGATGATG AGAACTGGCT CCGTCACACG CTGTTTTGGT TCCTACCAGA CGGTAATGAG ACAAAGTTTG GCTACAGGCC AGTACGTCTG CAGCCAATGA CTAATGAAAT AGAATCATTT CCTCCTCAGA AGAGGGTCTA CTAG
|
Protein sequence | MALSSYPIVE HEYDVVVVGA GGSGLRATLG MASQGLKVAC LSKVFPTRSH TVAAQGGISA ALGNISEDDW RWHAYDTVKG SDWLGDQDAI EYMCKNASSS VIELENFGVP FSRTSEGKIY QRPFGGMTTH YGKGRAIRTC AAEDKTGHAI LHALYQQSIK LDTEFFVEYI VLDLLMDDEG CKGVIAWDLK DGSLHRFRAH IVVIATGGYG RIYFSATGAH TCTGDGNAFV LRAGLPLQDM EFVQFHPTGI YGAGCLISEA VRGEGGYLIN SEGERFMAKY APSAIDLASR DVVSRAITME IRAGRGVGPK KDHIYLQVSH LGSKVIEQRL PGISETARIF ANVDVTKEPI PVLPTVHYNM GGIPANYHGE VLTVDDENVE KVVPGLMAIG EAACISVHGA NRLGSNSLLD LVVFGRTAAI RAREVIKANT KHSPIDKELT ERVLARFDRF RYADGGLPTA VLRRKMQLIM QEHAAVFRTQ EVLDEGCKKM REFLREMDEI NVTDRSLVWN TDLVETLELD NMVSQAVATI ESAANRKESR GSHAREDYPE RDDENWLRHT LFWFLPDGNE TKFGYRPVRL QPMTNEIESF PPQKRVY
|
| |