Gene Mhun_0995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMhun_0995 
Symbol 
ID3924042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanospirillum hungatei JF-1 
KingdomArchaea 
Replicon accessionNC_007796 
Strand
Start bp1118609 
End bp1120453 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content46% 
IMG OID637896632 
Producttetratricopeptide TPR_2 
Protein accessionYP_502464 
Protein GI88602286 
COG category[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.129848 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.103443 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACACGA ATGAAAAAGA ACTGATAATG CAGAGAGCCG CTTATCATGC AAAATGTGAA 
GAATTTGATA TGGCTCTCTC ATGCATTCAG ATGATTATCG ATGAAGATCC CGAGGACTCT
GTTGCGTGGT ATAATAAAGG GTACACTCTC CATCTGTCTG GAAAATTTGA TGAAGCCAGA
GACCTGTTTT TAAATCTCCA TTCCCGGTTC CCGGAGAAAG CTGATGTCTG CTTTGAGATT
GGACGAATTG CACTCAAGAG AGGAGATCTC AGTGAAGCAG AAGAATACTT TACCAAGTGC
ATTGCATTAG AACCTCTCCG ACCGGAACCC AGAATTGAAC TTGGAAAGAT GTGGTATGAC
TCGGGGTATT ATCATAAATC TGCAGATTCA TTTACTGAGG CACTGGTTTT TGATCCTGAT
AACCCGGAAA TCCGGACCTA TCTGGGTTTG ATATCTCATA AACTTGATAA ACCTGAAGAG
GCCGAACGAT GGTTTCGCGA ATCCCTCGAC TATGATCCTG ATAATACAGA AACTTTGTTT
TATTGTGCCA GGCTCTATGA GGAGATGGGT CGATGGGAGG ATGAACTCTG GTGTTATAAC
CGGCTCATAG AAATTGACCC TGAACAGGTC ATCCCCTGGC TAAAAAAAGG GATGCTTTAT
CTTTCACGGG ATGATCTTTC CATGGCAGTA TCATTTTTCC GGATGGCTTC CCGGCTTGAT
GCAGACAGCC ACCTCCCTCA TCTGCTCCTC GGTCTTGTAT ACAGTACTCT GGACCGCCAT
GAAGAAGCAA TTGCATCCCT TGAGAAAGCA GTATTATTGT CGGATGAACC AGATATTCTG
CTCCAGTATG GCCGGGTCCT TGGGGCATGT AACCGGTACG AGGATGCTTT GGATGTTTTT
GATTCAGTTC TGATGCAGCG TCCCGGCGAT CCAAACGCTG CCGAAGGATA TGCACGATCT
TTATACCATC TACAACGATG GGATGATCTG GTGTCATTCT GTGAAAAAGA GAGAGGAGAA
GATCCGGATA ATTCCTTCTG GATAACAACC CTTGCCCGCG TATGGGGCTG GCATCTTTCA
GAGGTTGATA AGGCTGTTAC AATTCTGTAT AAATGGCTGG ATCAGTATAA TGGAACTCAG
ATCTCACTCG TACTTGCCGA TCTGCTGGTG CATTCAGAAC AGTTTGAAGA GGCCAGAACT
TTATTGTCTG CTCTACTTGA AAATAAACCA GAAGATTATC AGATTTTGTT TCGGTATGCC
TCATTACTTG CCCAGATTAA GGAATTTGAA AAGGCTGCGG AGCAGTTTGA ACTGCTCTTA
CATCAAAGAC CTGCTGACGG GCATCTGGCA TACCTTGCAG GTCAGGCCTG TGAACAGTCA
GGGGATCCAG ACCGGGCGCT CGAATTTTTC ACCCGGGCGG TTACCAGTAT ACCTGATAGT
GCTGAGATCT GGCTTTCCCG TGCACGGGTA TTATTTGAAC TCGGGCAATT TGCTGAATCT
GCAGTAAATG CTGCACAGGC AGCCTCTTTG AATCCTGACT GGTCTGATGC ATTTCTTCTA
AAGGGGATGT CAGAGATCCA TGCGGAAGAG TATGATAAAG CCCGGATAAG TCTGACCTGT
GTCACCACTC TGGACCCTGA AAATCCGGAT GGCTGGAGAA ATTTAGGGGA TGTCCTGCTT
CTGGCGGGTG AAGAGGCAGC AGCACGTATC TGCTATGAAC GGACACTTAC CCTAGATCCG
GAAGATCTCA GAGCACAGGA TGGGTATAAA GTATGCACAG ATATTCTCAT CGGCAGGTCT
TCTTCAGATC AATCTGAAGA ACCTATATCG GATGAACATC AGTAA
 
Protein sequence
MHTNEKELIM QRAAYHAKCE EFDMALSCIQ MIIDEDPEDS VAWYNKGYTL HLSGKFDEAR 
DLFLNLHSRF PEKADVCFEI GRIALKRGDL SEAEEYFTKC IALEPLRPEP RIELGKMWYD
SGYYHKSADS FTEALVFDPD NPEIRTYLGL ISHKLDKPEE AERWFRESLD YDPDNTETLF
YCARLYEEMG RWEDELWCYN RLIEIDPEQV IPWLKKGMLY LSRDDLSMAV SFFRMASRLD
ADSHLPHLLL GLVYSTLDRH EEAIASLEKA VLLSDEPDIL LQYGRVLGAC NRYEDALDVF
DSVLMQRPGD PNAAEGYARS LYHLQRWDDL VSFCEKERGE DPDNSFWITT LARVWGWHLS
EVDKAVTILY KWLDQYNGTQ ISLVLADLLV HSEQFEEART LLSALLENKP EDYQILFRYA
SLLAQIKEFE KAAEQFELLL HQRPADGHLA YLAGQACEQS GDPDRALEFF TRAVTSIPDS
AEIWLSRARV LFELGQFAES AVNAAQAASL NPDWSDAFLL KGMSEIHAEE YDKARISLTC
VTTLDPENPD GWRNLGDVLL LAGEEAAARI CYERTLTLDP EDLRAQDGYK VCTDILIGRS
SSDQSEEPIS DEHQ