| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_0053 |
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| Symbol | |
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| ID | 3924867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanospirillum hungatei JF-1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_007796 |
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| Strand | + |
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| Start bp | 73164 |
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| End bp | 75125 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637895705 |
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| Product | DNA-directed RNA polymerase, subunit A'' |
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| Protein accession | YP_501550 |
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| Protein GI | 88601372 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0449558 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGAGT TGATGATCCC CTCAGAAGCT GCAGCAGCAG TTCTCCGGTA CTTTGAAGAG
CACAAAGTCA AGAAAAAATT CCCAGATGAT GTTCCGGAAC ATATTCGTGA AGTGCTCATC
GAGATGGTTG AGTACCGGAT GAAGGAAGAG GATGAGGAGG CAGAAGATAC TATCGATGAC
CAGATGTTTA TTGCCAAGAT GGAAGATCTC ATCCATGCAG AGAAATTCTA TGACTGGCTC
GAAGAGAGTT TCTCTCCTCT CGTGGTATCA TCAGATGATG ATGAGTCGAT AATCCTCCCT
CAGACCATCA TTACTCCCAC AGCCCGTCCG CGACTTACTA CACTGGATAA AAAATCAATG
GAAGTCAGGG AGCACTTTTC TGACTACCAG ATGACTATTG AGAAGATTAA CTCCATCCCC
GAGCGGATTG AGAAGATCCT TAAGGATAGA ATAAAGGATA TCAAACGCCA GGAAAACCCG
AACTTCAGGC TTACTCAGAA ACAATACACG GTATTTCTGA CCAATCTTCT CAAAAAGGGC
GATTTTGAAG ACTGGGTCAT GCAGACCTTT CCGCTTCCAG CTGACATGGA GCAGGAAGTC
TTCACGGTCA GGAAGGCTGT TCCTGAAGAA GAGATTAAGA TTCCTGACTG GGTCGATGCA
GCGGCATTTG AGGGCCTGAA CCGGTTTGAG CAGGATAAAT TCCGCGCTTT ACTCCGGGAT
CACCTCTCTT CCCTGAATGA ACTTGTCGAA CACCCACAAG TTACCCAGCG GATGTCCAAA
CGGTTCTTTG AGCTGATAGC CATAGGTCTT CCGCACCGGA CCAATACCAC TCTTGCCAAG
ATTATCATCG GACGTGAGAT TGAGGGTCTG ACTGATCCCT CCCGGATTGT AACAGACGAG
CAGTATGCCA AGATTCTCGC CCAGATGGTC AAGGAATATA AGCACACCAG GATAGAACCA
TGTGAAGCGG TCGGAGTTGT TGCAGCCCAG TCTATCGGTG AGCCGGGTAC GCAGATGACG
ATGCGTACTT TCCACTACGC GGGTGTGGCT GAAATTAACG TTACCTTAGG TCTTCCCCGT
CTGATTGAGA TCATGGATGC CAGGAAGGAA CCATCCACCC CGACCATGAC CATCTATCTC
CGTGAGGGGT ACTCAACTGA CCGTGATAAA GCGCGGCAGG TATCCTGGCA GATTGAGGCA
GCTCCGCTTC AGGAGTTTGG AGATATAACC ACTGACATGG CAAATATGCA GATCGTGGTT
CATGTCAACA AAGCGGTCTG TGAGAAACGG AAGATATCAG TCAGGGAGAT CCTTGAGACC
GCTCCAAAGA AGATCAAGGA ACGAAGACAT TATCGTGATT TTGAGTTTGA GACGAATGAG
TCTGAAGGGC TGCTCATCTT CATCCCCAAG GATCGGGGGA GTTATCAGAA CCTGTTCCAG
CTCAAAGAAC ATGTCCGGAA TGTTATCGTT CAGGGTATTG ATGACATTGA ACGTGTAGTC
GTCAGAAAGG AGTCCGGAGA ATACATTCTC TACACCGAAG GCTCCAACCT GAAAGATGTG
TTTGCCATCC GTGGTGTTGA TACAACCAGG ACCAGGACGA ACAACATAAA CGAGATTTCA
CAAGTTCTTG GTGTCGAAGC CGCCAGAAAT GCCATCATCA ACGAAGCACT TGCGACTCTC
TCCGAACAGG GTATCATGGT CGATGTGCGC CACATCATGC TCGTTGCAGA TATGATGTGC
ATGGAAGGTG AAGTAAAGCA AATCGGACGT CACGGTATTG CCGGAGAGAA GGAATCTGTT
CTTTCCCGTG CAGCATTCGA AGTGACCGTG AATCATCTCC TGGATGCGGC AGTGGCCCAT
GAAGCTGACA TCCTCTGTGG TGTGACTGAG AATGTCATTG TTGGTCAGCC AATTCAGCTT
GGAACAGGGG ATGTTAAATT AGTAGTAAAG CAGAAAGTAT AG
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| Protein sequence | MEELMIPSEA AAAVLRYFEE HKVKKKFPDD VPEHIREVLI EMVEYRMKEE DEEAEDTIDD
QMFIAKMEDL IHAEKFYDWL EESFSPLVVS SDDDESIILP QTIITPTARP RLTTLDKKSM
EVREHFSDYQ MTIEKINSIP ERIEKILKDR IKDIKRQENP NFRLTQKQYT VFLTNLLKKG
DFEDWVMQTF PLPADMEQEV FTVRKAVPEE EIKIPDWVDA AAFEGLNRFE QDKFRALLRD
HLSSLNELVE HPQVTQRMSK RFFELIAIGL PHRTNTTLAK IIIGREIEGL TDPSRIVTDE
QYAKILAQMV KEYKHTRIEP CEAVGVVAAQ SIGEPGTQMT MRTFHYAGVA EINVTLGLPR
LIEIMDARKE PSTPTMTIYL REGYSTDRDK ARQVSWQIEA APLQEFGDIT TDMANMQIVV
HVNKAVCEKR KISVREILET APKKIKERRH YRDFEFETNE SEGLLIFIPK DRGSYQNLFQ
LKEHVRNVIV QGIDDIERVV VRKESGEYIL YTEGSNLKDV FAIRGVDTTR TRTNNINEIS
QVLGVEAARN AIINEALATL SEQGIMVDVR HIMLVADMMC MEGEVKQIGR HGIAGEKESV
LSRAAFEVTV NHLLDAAVAH EADILCGVTE NVIVGQPIQL GTGDVKLVVK QKV
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