| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2970 |
|---|
| Symbol | |
|---|
| ID | 3917405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 3189683 |
|---|
| End bp | 3190936 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640445748 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_498239 |
|---|
| Protein GI | 87200982 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2223] Nitrate/nitrite transporter |
|---|
| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.17819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGT CCGCAATGAC ACTGAACACA CCCAGAATTC CGGTCGGAAA GTCGTTCTGG
CAATCCGGCC ACCGCCCGAC GCTGTTCGCG GCGTTCCTCT ATTTCGACAT CGCCTTCATG
GTCTGGGTGA TCCTCGGCCC GCTGGCGCCG ATCATCTCGA AGGAGCTGGG GCTGGACCCC
GCACAGAAGG GGATGATGGT GGCGGTGCCA ACGCTGGCGG GCGCGGTCAT CCGCCTCGTC
AACGGGCTGC TGGTCGACCG CATCGGCCCC AAGCGCACGG GCATCATCAG CCAGGTGGTG
GTCATCGCGG GCATGTTCGC CGCGTGGTGG TTCGGGATTT CGTCCTACGA GGGGACGCTG
GCGCTTGGCG TGATCCTCGG CTTTGCCGGG GCGAGCTTCG CGGTCTCGCT GCCGCTGGCG
AGCCGGTGGT ATCCGCCCGA GCACCAGGGC AAGGCCATGG GCATTGCCGG CATGGGCAAT
TCGGGCACGG TCTTCGCCTC GCTCTTCGCG GCCTTGCTGG CCAAGTCGTT CGGCTGGACC
AATGTCTTCG GCCTGGCGCT GATCCCGCTG GTCGCGGTCT TCGCGTTCTA TCTCGTCGCG
GCCAAGGACA GCCCCGAACA ACCGGAGCCC AAGCCGCTTT CGGCCTATGC CTCGGTGCTG
AAGGAGCAGG ACGCATGGTG GTTCATGCTG TTCTACTTCG TGACCTTTGG CGGCTTCGTC
GGCCTGTCCA GTTCGCTGCC GACGTTCTTT GCCGACAGCT TTGGCGTGAC GCCGGTGATC
GCCGGGTATT GCACGGCGGC GGCGGTGTTC ATGGGCTCGA TGCTGCGGCC GCTGGGTGGC
GCGCTTGCCG ACCGCTTCGG CGGCATCCGC ACCCTTTCGG TCGTCTACGT GGTGGCCGGT
GCCCTGCTGG CGGTTATCGC CGCTGTTTCC ACCCAGGGAC TGGCGCTGGC CATTGCGCTG
TTCGTGGCGG TGATGGGGAC GCTGGGCGTG GGCAACGGTG CGGTTTTCCA GCTCGTGCCG
CAACGGTTCC GCAAGGAGAT CGGTGTGATG ACCGGGCTCG TAGGCTTCGG GGGCGGCGTT
GGCGGTTTCT ACCTCGCATC GTCGCTGGGC GCGATCAAGA AGGCCACCGG CAGCGCCTCG
CTCGGCTTCC TGATCTTCGC TGCCCTCGCG GTGGTCGCGC TGGTCGGCCT GACGGCAGTC
AAGCGCCGCT GGCGGACGAC CTGGGGCGCA GCGCTGGGCG GCGCGCGCAT CTGA
|
|---|
| Protein sequence | MASSAMTLNT PRIPVGKSFW QSGHRPTLFA AFLYFDIAFM VWVILGPLAP IISKELGLDP
AQKGMMVAVP TLAGAVIRLV NGLLVDRIGP KRTGIISQVV VIAGMFAAWW FGISSYEGTL
ALGVILGFAG ASFAVSLPLA SRWYPPEHQG KAMGIAGMGN SGTVFASLFA ALLAKSFGWT
NVFGLALIPL VAVFAFYLVA AKDSPEQPEP KPLSAYASVL KEQDAWWFML FYFVTFGGFV
GLSSSLPTFF ADSFGVTPVI AGYCTAAAVF MGSMLRPLGG ALADRFGGIR TLSVVYVVAG
ALLAVIAAVS TQGLALAIAL FVAVMGTLGV GNGAVFQLVP QRFRKEIGVM TGLVGFGGGV
GGFYLASSLG AIKKATGSAS LGFLIFAALA VVALVGLTAV KRRWRTTWGA ALGGARI
|
|---|
| |