| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2914 |
|---|
| Symbol | |
|---|
| ID | 3915553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 3131492 |
|---|
| End bp | 3133135 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640445692 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_498183 |
|---|
| Protein GI | 87200926 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAATCTC GCAGAACAGC CATGAAGCTT GCCGTCGCGG GGGCTTTGGG GATCAGCGGC
TCGGGTTTGG CTGCAAACGC AGCGAAGAAG GACGACGCCA AATTCAAACC AGCCGCAGAC
CGCGATGGTC CGCGCTGGCG CACGGGCATC GAAGGGCAGC GCATTGCGGA TCTTGGCGAC
GGTCGGTTCC TCAATCCGGT GCTTTCCGGC GACTACCCGG ATCCTTCCGT CCTGAAGGAC
GGCGACGATT ACTACATGAC GCATTCCTCC TTCGATTCCG CGCCCGGTTT GCTGATCTGG
CATTCGCGTG ATCTCGTGAA CTGGCGTCCA CTCGGTCCAG CCTTGGCCAA ACCGCTGGGC
ACGGTCTTCG CGGTCGATAT TGCAAAGCAC GACGGTCGTT ACTTCATCTA CATACCTTTC
ATGAAGGCAC CGTGGTCGAC CGATTTGCCG AGCTTCGCGA ACACATTCGT CATTCACGCG
CCTTCCATGG AGGGACCGTG GAGCGATCCG ATCGATCTCA AGGTTGGAGG TCTGATCGAT
CCCGGCCATG TGGTCGGGGA GGACGGGCAT CGTTATCTTT TCTTCAACGA TGGCAAGCGT
GTGCGCCTGA CTGCGGATGG TCTTGCCACC GACGGGCCTG TCGAGACGGC CTATCAGGCT
TGGCGCTATC CCGACGACTG GATCACCGAA GCCTACTCGC CCGAGGGACC CAAGCTGTTC
CGCCGGGGAG ATTACTTCTA CCTCGTCAAC GCGGTTGGCG GGACAAGCGG CCCTGCGACG
GGACACATGA TCGTTGCCGC GCGGTCGCGC TCGATCCACG GGCCTTGGGA AAACTGCCCT
CACAACCCGA TCCAGCGCAC GCATTCCCGG CAGGAAATGT GGTGGTCGCG GGGGCATGCG
ACGTGTGTCG AAGGACCGGG CGGGCAGTGG TACATGGTCT ACCACGGCTA CGAGAACGGT
TATCACACGC TCGGACGGCA GACTCTCGTC GAGCCGATCG AGTGGACGCC AGACGGCTGG
TTCCGGGCAA CCGGCGGGGA TCTGTCGGAA CCGCTGCGCA AACCGCGCGG ACCGGCGCAG
CCTCATGGCA TGGCGCATTC GGATTCCTTC CACACGGACC GCTTGGGCAC GTTGTGGAAT
CTTTATGGAA GCGCACCGGC GGAAACCGCG CGAATTGCCA TTGGTGATGG TGCGCTTACG
CTGAAGGCAA AGGGCAAGGG CCCGTCCGAC GGGGTGGTTC TTACCCAGCA AGTGGGCGAC
AGATCCTACG AAGTCAGTGT CGAACTCGAG CTGACCGACA AGACGTCGGG CGGACTTCTG
CTGTTTTTCG ATGACCGGCT GTTCCTCGGC ATGGGCATCG ACGGACACCG GATGACGACC
TGGAGAGGTG GCAAGGCATC ATACTGGCCG GAGCCTGCCC CCCCTGCGCG GCGCATTTTC
ATGCGCATCA CCAACCAGGA GCAGGTCGTC ACCTTCTACT ACAGCCTGGA TGGCAAGAAC
TGGACCCGGC ACGGCGTTCG CTCGGAGGTA ACCGGCTATA ATGCCAACAC GGTTGATAAC
CTTCTGAGCC TGCGTCCGGC CCTGTATGCT GCCGGCGAGG GTGAAGTCCT GTTCCGAAAC
TTCACCTATC GCGCACTGGC GTAA
|
|---|
| Protein sequence | MESRRTAMKL AVAGALGISG SGLAANAAKK DDAKFKPAAD RDGPRWRTGI EGQRIADLGD
GRFLNPVLSG DYPDPSVLKD GDDYYMTHSS FDSAPGLLIW HSRDLVNWRP LGPALAKPLG
TVFAVDIAKH DGRYFIYIPF MKAPWSTDLP SFANTFVIHA PSMEGPWSDP IDLKVGGLID
PGHVVGEDGH RYLFFNDGKR VRLTADGLAT DGPVETAYQA WRYPDDWITE AYSPEGPKLF
RRGDYFYLVN AVGGTSGPAT GHMIVAARSR SIHGPWENCP HNPIQRTHSR QEMWWSRGHA
TCVEGPGGQW YMVYHGYENG YHTLGRQTLV EPIEWTPDGW FRATGGDLSE PLRKPRGPAQ
PHGMAHSDSF HTDRLGTLWN LYGSAPAETA RIAIGDGALT LKAKGKGPSD GVVLTQQVGD
RSYEVSVELE LTDKTSGGLL LFFDDRLFLG MGIDGHRMTT WRGGKASYWP EPAPPARRIF
MRITNQEQVV TFYYSLDGKN WTRHGVRSEV TGYNANTVDN LLSLRPALYA AGEGEVLFRN
FTYRALA
|
|---|
| |