Gene Saro_2627 details

Gene Information

• Locus tag: Saro_2627
• ID: 3917042
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: -
• Start bp: 2843398
• End bp: 2846748
• Gene Length: 3351 bp
• Protein Length: 1116 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640445386
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_497897
• Protein GI: 87200640
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0591] Na+/proline symporter; [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.594612
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGCGA GTTTTGCCGC GTTTCTGGGT TTGAGCCTTG TGGCGTTGCT CTTCGGGGTT 
GCCGCCGCGA CGGAACGGTT CGGCACGTCG AGCCGCATGG GTCCGAAATT CAGGCACGGC 
GCGTATACCC TTGGCCTCGG AGTCTACTGC TCCAGCTGGA CGTTCTATGG GGCGGTCGGA 
ACAGCAGTCA GCGAGGGTTG GAACTACCTG CCGATCTACC TCGCACCTGT CTTTCTGCTG 
CTCGCCGCGC CGCGGTTTCT CGAGCGCTTG TCGCGTGCAG TACAAGAAGA GCGAGCCTCG 
ACGATCTCGG ACTTCATTGC GGCGCGCTTT GGCCACGATC CGGGGGTAGC CCGTATCATC 
ACGGTTATCG CACTGTGCGG GACCGTGCCG TACATTGCGC TTCAGTTGCG GGGAATGGGT 
ACGGCCATCG CGGCCCTGTC CGGCAGGGAT CTTGCGGTGC CGGTGATGGT GACGGCGGCG 
GGTGGGCTGT CACTGTTTGC CATTCTCTTC GGGGCGCGGC GGTATGAGAT TTCCGGGCGG 
AGCGAGGGCC TGGTGTTCTC TATCGCGCTG GAATCCGTGA TCAAGTTGGT GGCGCTGGGG 
CTGGTCGGTG CTTACGCGGT CTATGTCCTT GCAAAGGCCG GGCCTGCCGA TCTCGGCCGC 
GCGGGAAGCG TGCTGGGGGA GCAGTTTGGC CCGTCCCATG TCACTATAGA GACGTTTACG 
GTGGCGCTCG TGTCGGCGTT TGCGGTGCTG GTGCTGCCGC GGCAGTTCTA CATGGGATTG 
GCGGAGGCGC ATTCTCCGCG AGACTTACCT CGGGCCCGGT TCGGCCTGTC GCTCTACCTC 
CTGGTGATGG CGGCTCTGAT CGTTCCCATC GCGCTGGCGG GGCTGGCGGC CTTGCCCCCA 
GGCGTCGCGC CAGACAGCTT CGTCCTGCTC CTGCCCGCGC GCGAAGGGGC CGATGCCATT 
GCGATTGCGG CGCTGCTGGG TGGGCTGAGT TCTGGCGCTG CGATGGTTAT CGTCGATGCG 
ACGGCGCTGT CGACCATGGT GTCGAACGAC CTCATCTTTC CCGCAGTGGT CCGGAACGAG 
GGAGCCGCCG GGGCGGGTGA TCTCGGGCGA AAGATGCTTG TTGTGCGCCG ATTGGCGATT 
GTCGGCGTCG TCGGCCTCGC GCTTGCATGG GCATTGCTGG TCGATCCGGC GCGGTCGCTT 
GCATCGATCG GCCTGGTCGC GTTTTCCGCG ATGGTTCAAT TCGTGCCGCA CCTGCTGCTT 
GCGGTAGCGG CCCCGGGGAG GGATCCGGTG GCAGCGCGCG CCAGCCTGCT GACCGGTCTC 
AGTCTTTGGC TCTACACGCT CGCCCTTCCG CCGATCATGC CAGCATGGCT GGTGTCGGCG 
TTGCAGGGGA CGATCACCGA TCCCTCGCGC CTGCTGGGAA TTGGCCATGC TTCACCCTTG 
GTCCACGGGG TAGGCTGGAG CCTGGCGGCA AATCTGGCAG TCCTTGCGCT CGCCATGGCG 
CGCCAGAGCC GGGCGCCGCG CATGCCGCGC CTTGTTCTGG TTGACCGGGC GGTCGGCAAC 
CTCGGCGATC TCGCCGGATT GGCCGCGCGC TTCATCGGAG AGGAGCGGGC GCTCGCCGCA 
TTCCCCCGCG AACGGCATGC CAACCCAGTC GATCGTCAGT CGGCCAGGTT GGCCCAGGAC 
CTGATCGGTG GCGTCGTGGG CGCATCGTCT GCCCGGGCGC TGGTGGCATC GGCGCTTGCG 
GGCGGGCGCA TGAACCTGGA GGACGTTACC CGGTTGCTGG ACGAGGGCGG GCAGTCGCTG 
AGCTTTTCCC GGCAACTGCT CGCGGCCACT TTCGAAAATC TTCAGTCCGG CGTCAGCGTC 
ATCGATGGCG AACTCAATCT CGTGGCCTGG AATACACGTT ACGTCGACCT GTTCGGCTAC 
CCGCCCGGCC TCGTGCGCGT CGGCGTGCCG ATAGCGACGC TCATCCGCTA CAACGTCGAG 
CGCGGAGACT TCGCCGGAAC GGTGGAGGAA GAGGTCGAAA AGCGCCTGCG CCACCTGCGG 
GCAAGACGTT CATATGCCTC GGAAAGGGTG CGCCGGGATG GCAGGGTCAT CAAGTCGGTC 
GGCGGCCCCA TGCCTGGCGG CGGCTATCTG ACCTCGTTTA CGGACATCAC CGAGGAAGCG 
GCGGTCCGGG CAGAACTTGA ACGTACACTC GATGAACTCG AACAGCGAGT GAACGACCGG 
ACCAGCGAAC TGAGCGAAGC CAATCGCCGC CTTGCCGACG CCACGCGCGA GAAAACCCGT 
TTCCTTGCCG CAGCCAGTCA CGACCTGCTC CAGCCGCTTC ACGCGGCTCG GCTCTTCGCC 
TCGGCGCTCG ATCGCAATCT TGAAGGAAAT GCCAAGGTGC TGGCGGCGAG GGTGGACCGG 
TCGATCGTGG CAGCCGAAGC CTTGTTGCGC GCACTACTCG ACATTTCCAA GCTGGATGCG 
GGTGGTATTC AGCCTGACCC CGAACCGGTG CCGCTGGCGC CTCTGATCGC TGACATTGCC 
GAGAACATGC GTCCACTCGC CGAGGAGAAG GGCATTACGC TGCGTATCGG GAGCCTGGTC 
GGAACGGTCG ACACGGACCC GGGCCTGCTG CGCTCGGTAC TTCAGAACCT GGTGGCCAAC 
GCGGTGCGCT ACACGGTTGA GGGTGGGGTG ATCATCGGGG TGCGGCGGCG CGGGGCTTTC 
CTGCGCATCG ATGTCTATGA CACCGGCGTC GGCATCCCGC CGGACAAGCA GCGGGACATC 
TTCAGCGAGT TCACCCGCCT CGGGTCGGTG GAAGCCGAGG GGTTGGGGCT CGGGCTGGCG 
ATCGTCGAGC GGATCGCGCG ATTGATCGGC GCCCGGATCG AGGTCCGCTC GGTCGAAGGG 
CGTGGCAGCC GTTTCAGCGT GCTCCTGCCG GCAGCAGCTT GCAGCACGGA CGTTCCGCCT 
GATCCCAACG CCGACAAGGC GGATGTCGGT GGGCGGCCAC GCGGCGCGCT GAAGGTTCTT 
GTGGTCGACA ACGAACCCGA CATCGTGGAG GCAACGGTCG CGTTGCTGGA AGGCATGGGA 
CATCATGCCA TCGGTGCAGC GGGGACGGCG CAGGCACTGG AGAAAATCCA CGCGGTGGAC 
GTGCTTCTGG CAGATTATCA CCTCGATGGG GGCGAGGACG GGCTGCGGTT GATCGATCAG 
GCGCGCAGCC GCAATCCGAC GCTTGCGACA GCATTGATCA CCGCCGAGAG CGGCGCGGAC 
TTGCGCAATC GGTTGCGAAT GCGGCGCGTG CCCCTGTTCG TGAAACCGGC AGATCCGGCT 
GCGATCGAGG CCTTTCTGGC TGGCGTGTCA GGAGGCGAGA TCGAGCCCTA G 

 

Protein sequence

MTASFAAFLG LSLVALLFGV AAATERFGTS SRMGPKFRHG AYTLGLGVYC SSWTFYGAVG 
TAVSEGWNYL PIYLAPVFLL LAAPRFLERL SRAVQEERAS TISDFIAARF GHDPGVARII 
TVIALCGTVP YIALQLRGMG TAIAALSGRD LAVPVMVTAA GGLSLFAILF GARRYEISGR 
SEGLVFSIAL ESVIKLVALG LVGAYAVYVL AKAGPADLGR AGSVLGEQFG PSHVTIETFT 
VALVSAFAVL VLPRQFYMGL AEAHSPRDLP RARFGLSLYL LVMAALIVPI ALAGLAALPP 
GVAPDSFVLL LPAREGADAI AIAALLGGLS SGAAMVIVDA TALSTMVSND LIFPAVVRNE 
GAAGAGDLGR KMLVVRRLAI VGVVGLALAW ALLVDPARSL ASIGLVAFSA MVQFVPHLLL 
AVAAPGRDPV AARASLLTGL SLWLYTLALP PIMPAWLVSA LQGTITDPSR LLGIGHASPL 
VHGVGWSLAA NLAVLALAMA RQSRAPRMPR LVLVDRAVGN LGDLAGLAAR FIGEERALAA 
FPRERHANPV DRQSARLAQD LIGGVVGASS ARALVASALA GGRMNLEDVT RLLDEGGQSL 
SFSRQLLAAT FENLQSGVSV IDGELNLVAW NTRYVDLFGY PPGLVRVGVP IATLIRYNVE 
RGDFAGTVEE EVEKRLRHLR ARRSYASERV RRDGRVIKSV GGPMPGGGYL TSFTDITEEA 
AVRAELERTL DELEQRVNDR TSELSEANRR LADATREKTR FLAAASHDLL QPLHAARLFA 
SALDRNLEGN AKVLAARVDR SIVAAEALLR ALLDISKLDA GGIQPDPEPV PLAPLIADIA 
ENMRPLAEEK GITLRIGSLV GTVDTDPGLL RSVLQNLVAN AVRYTVEGGV IIGVRRRGAF 
LRIDVYDTGV GIPPDKQRDI FSEFTRLGSV EAEGLGLGLA IVERIARLIG ARIEVRSVEG 
RGSRFSVLLP AAACSTDVPP DPNADKADVG GRPRGALKVL VVDNEPDIVE ATVALLEGMG 
HHAIGAAGTA QALEKIHAVD VLLADYHLDG GEDGLRLIDQ ARSRNPTLAT ALITAESGAD 
LRNRLRMRRV PLFVKPADPA AIEAFLAGVS GGEIEP