| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1997 |
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| Symbol | |
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| ID | 3917317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2126345 |
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| End bp | 2129830 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640444748 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_497270 |
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| Protein GI | 87200013 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.283179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGG TCTACCCGCT CAAGGAAAAC CAGGCCCATG CGGTTCATCC GCAGCGCACG
GTGTGGCTGT CCGCGTCGGC CGGCACCGGC AAGACCCAGG TGCTTTCCGC CCGCGTCCTG
CGGCTGCTTT TGCAGGATGG CGTAGAGCCC GAACAGCTTC TCTGCCTGAC TTTCACCAAG
GCCGGCGCCG CCGAAATGGC CACACGCGTG AACGAGGTTC TGGCAAGCTG GGTCCGGTTG
CCGGAAATCG AGCTTGCCCA GCAACTGAGA GCCATCGGCG CGCCGTTCGA TCCGGGCACC
GTGGCGCGTG CCCGCAGCCG CTTTGCCGCC GTTCTCGATT GCCCCGGCGG CGGATTGCGG
ATCGAGACGA TCCACGCCTT CTGCCAGTGG CTGCTGGCCT CTTTCCCGGT GGAAGCAGGT
CTGCGGCCCG GGACCCGCGC GATGGAAGAC CGCGACCGCG CGCTGCTGGT GCGGCAGGTT
CTCGCCGAAA TGCTCGTCGA AGCCGGGGAA CGTGGCGACG AGGAACTGCT CGACGCGCTG
GCGACGCTTT CGCGGCGGAT GAGCGAGGAT CAGGTAGAAG CCTTCCTCCT GCGCTGCGCC
TCGGCGCGGG ACCTGTGGTG GGGGGCCGGC TCCTGGACCC CGCCGCTGCG GCCGCGCATC
AACCGCGCGC TTGGGTTGGG CGAGGATGCG GGCGTCGCCG CGCTTGCCGC CCTTTGCGCC
GAAGACGCGT TCGATTGCCA GTCGGTCCGT CGCTGCATGG AGATGAATGC TGCATGGGGG
ACCAAGGGCG GGATCGAGAA TGCGAACGCG CTTGGAGACT GGCTGTCGGC AACGCCGTCG
CGCCGTCTGG AGACGATCGC GCTGCTTGAA GCCTGCTTCC TGACGGCCAA GGGCGAACCG
CGCTCGACCA CGAACATCGA GAAGAAGCAG CCGGACTATC CCGGTTACGC ATCGCGGGTG
ATCGCCTGCA TCGAGGCATT GCGAGCCGAG CGGGCGAAGA TCGACCTTGC CGACCTGCTC
GAAACCGCGC TTGGCGTCGG TCGCCGCTTC GCGCTGGCGT GGGACGCGGC GAAGACCCGC
GAGGGCTTCA TCGATTTCGA CGACCAGATC CGCACCGCCG CCGAACTGCT GACCCGGCGG
ACAACTGCCG AGTGGATACG TTTCAAGCTT GACCGCCGCT TCGACCATAT CCTTGTCGAC
GAGGCGCAGG ACACCAACGC CTCGCAGTGG CAGATCGTGC TGGAAGGCCT CGTATCGGAC
TTCTTCACCG GTGAAGGCCA GCGCGGCCCC GCAGTGCGCA CGCTGTTCGT CGTGGGCGAC
TACAAGCAGG CAATCTTCGG CTTCCAGGGT ACCAGCCCGG AAAACTTCGC CCGCGCCAGC
ATTCGCGTGA AGGAGCAGCT TGCCGAAGTC TCGGCGATCC TGCGCGATCC GGAGCGCGAA
CTGCTCGAAC TTGGCCTGGG CCAGTCCTTC CGCACCGCCG CGCCGATCCT CGGGTTCGTC
GATGCGGCGA TAGGGCGGAT TGGCTGGGAC CGATTCGGGT TGAGCCAGAT GCCGGAGCAG
CACAAGGGCC TGCCGATCCC CGGAACCGTG GGGCTTTGGC GGGTGGTCGG CGACGATGCG
GGCGAACCGG GAGAGGACGG CGAGGACACG GACGAAGGCG AGGAAGGCTG GCTTTCCCGC
CCGGACCGCG AACTCGCGGA TCGTATCGCC CGGCAGGTGC GGGCGTGGAT CGATGTCGGT
TTTCCGCTGG GCAAGGGCGA CACGCCGCGA CTGGCGAACG CCGGCGACGT GATGATCCTT
GTCCGCAAGC GCAAGGAACT GGCCGGGCTG ATCGTTGCCA GGCTTCATGC GCGCGGCGTG
CCCGTTGCGG GCGTGGACCG GCTACGGCTC GGCGCGCCGC TGGCGGTCAA GGATCTGGTC
GCGGCATTGC GGTTTGCCGC GCAGCCACTC GATGACCTGA ACCTTGCCGG GCTGCTGGTG
TCGCCGCTGA TCGGATGGTC GCAGGAAGAC CTGCTCGAAC GCGGCTATCG CCCCCATGGC
GAACGGCTGT GGGAATGGCT GCGTCGCAAC GAGGGGCCGG AAACGTTCGA GATGATGGAA
CGGCTGCGCG CCCTGTTGGC GCGGGCCGAT TTCGATCCGC CGCAAGTCCT GCTGCACTGG
CTGCTGGTGG GGCCCTGGGA TGGCCGGCGC AAGCTGGTGG CGAGGCTTGG CGGCGAGGCC
AACGATCCGA TCGATGAACT GCTCAACGCC GCGATGGCCT ATGCCAGCGC GAACGTGCCA
AGCCTTGTCG GGTTCCTCCA GTGGTTCGAT GCCGGCGAGG GCGAGTTGAA GCGCGAAGCT
GGCAAGAGCG ACGGCCTTGT GCGCGTGATG ACGGTCCATG GATCGAAAGG GCTTCAGGCA
CCCATCGTGA TCCTGGCCGA CGCGGCGGAC GATCCGGACC TATCGCCTCC GCGCGGCCTC
GAAATCGTCG AGGATGTCAT GGGCGCGCGC CGCAAGGTGC CGCTGCCGCC GCTCCGCAAG
GAGGAGAAGG CTCCCGCCGT GATCGAGGCC GAGGCCGAGG CCAAGCGGGC CGAGCGCGAG
GAGCATTGGC GCCTGCTTTA CGTGGCCATG ACCCGGGCTG AAGAAGCGCT GTTCATCGCC
GGGGCCAAGG GCAAGGTGCG GCGGACGAGC GGCGGCGAAC TTCCGGTCGA TAGTTGGTAC
GCGCAACTCG AACCGCTGTT CGGCGATGGC GAGTGGGAAG TCGATCCGCT GTGGGGCGGG
CGCAAGACCA TCGGTCGGCC ACAGGATTTC GTCGGGCGCC CTGCACAGGC AGATGTCTCG
CCAGTCCGGG CGGCACTGCC TCAGGTGTTG CTGACGCCCG TGGGTGCCGA ACCGCGTCCG
CCACGGCCGC TTGCGCCATC GTCGCTTGGC GAGGACGAAG CGTCCGAGCC GCCCACACAT
CCCGGGCCGG GAGCGATGAT CGCTGCGCGG CGCGGGACCT TGCTGCACCG CCTGATCGAG
CGCCTGCCCG AAGTCTCTCC GGCGAGCCGG GAAGCGTCGG GTATGGCATG GCTGGCGCGG
GCCGGCAGCG ATTTCGACGA GGCGGAGCGT TCGGCAATGG TGCGTTCCGC GCTTGCGGTG
CTCAATCATC CGGAGTGGTC CGACGTGTTC GGTCCGGATT CGCTTGCGGA GGTTCCGTTG
GCGGCAGTGG TCGCGGGACG CGTGGTCAGC GGGACGGTCG ACCGGCTGGT CATCGGACGT
GAGCGGGTCC GTATCGTCGA TTTCAAGACC GCGCGCAGGC CCCCGGCGAG TTTTACGGAG
GTGCCCGCCG CCTATGTCCG GCAGATGGCG GCCTACGTTG CCGCGCTTGA GGCCATCCAT
CCCGGCGTAC CGGTCGAGGC AGCGCTACTC TATACCCACA CGCCGCAGCT TTTCGTTGTA
CCGCAAGAGG TTATCGCCGC GCAAAAGCTG CGCCTTGCCG GACAGCAGGA ATCCTTTTCC
GCATGA
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| Protein sequence | MSKVYPLKEN QAHAVHPQRT VWLSASAGTG KTQVLSARVL RLLLQDGVEP EQLLCLTFTK
AGAAEMATRV NEVLASWVRL PEIELAQQLR AIGAPFDPGT VARARSRFAA VLDCPGGGLR
IETIHAFCQW LLASFPVEAG LRPGTRAMED RDRALLVRQV LAEMLVEAGE RGDEELLDAL
ATLSRRMSED QVEAFLLRCA SARDLWWGAG SWTPPLRPRI NRALGLGEDA GVAALAALCA
EDAFDCQSVR RCMEMNAAWG TKGGIENANA LGDWLSATPS RRLETIALLE ACFLTAKGEP
RSTTNIEKKQ PDYPGYASRV IACIEALRAE RAKIDLADLL ETALGVGRRF ALAWDAAKTR
EGFIDFDDQI RTAAELLTRR TTAEWIRFKL DRRFDHILVD EAQDTNASQW QIVLEGLVSD
FFTGEGQRGP AVRTLFVVGD YKQAIFGFQG TSPENFARAS IRVKEQLAEV SAILRDPERE
LLELGLGQSF RTAAPILGFV DAAIGRIGWD RFGLSQMPEQ HKGLPIPGTV GLWRVVGDDA
GEPGEDGEDT DEGEEGWLSR PDRELADRIA RQVRAWIDVG FPLGKGDTPR LANAGDVMIL
VRKRKELAGL IVARLHARGV PVAGVDRLRL GAPLAVKDLV AALRFAAQPL DDLNLAGLLV
SPLIGWSQED LLERGYRPHG ERLWEWLRRN EGPETFEMME RLRALLARAD FDPPQVLLHW
LLVGPWDGRR KLVARLGGEA NDPIDELLNA AMAYASANVP SLVGFLQWFD AGEGELKREA
GKSDGLVRVM TVHGSKGLQA PIVILADAAD DPDLSPPRGL EIVEDVMGAR RKVPLPPLRK
EEKAPAVIEA EAEAKRAERE EHWRLLYVAM TRAEEALFIA GAKGKVRRTS GGELPVDSWY
AQLEPLFGDG EWEVDPLWGG RKTIGRPQDF VGRPAQADVS PVRAALPQVL LTPVGAEPRP
PRPLAPSSLG EDEASEPPTH PGPGAMIAAR RGTLLHRLIE RLPEVSPASR EASGMAWLAR
AGSDFDEAER SAMVRSALAV LNHPEWSDVF GPDSLAEVPL AAVVAGRVVS GTVDRLVIGR
ERVRIVDFKT ARRPPASFTE VPAAYVRQMA AYVAALEAIH PGVPVEAALL YTHTPQLFVV
PQEVIAAQKL RLAGQQESFS A
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