| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1953 |
|---|
| Symbol | |
|---|
| ID | 3917268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 2071344 |
|---|
| End bp | 2072978 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640444700 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_497227 |
|---|
| Protein GI | 87199970 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGTGA ATGCATCCGT AACGAAGAAC GACGCCGCGA AGCCGAGCGC GTCGGATATC
AGGCTCGTGA TCGCCGCCAG TTCGGCGGGT ACCGTGTTCG AATGGTACGA TTTCTTCATC
TACGGCACGC TGGCATCAAT CATCGGCAGG ACGTTCTTTC CCTCGGACAA CGCAACGCTC
CAGGTGCTGC TGGTGTGGGC GGGATTTGCC GTCGGCTTCG GCTTCCGTCC GCTCGGCGCA
GTCTTGTTCG GCTATCTCGG CGACAAGCTC GGCCGCAAGT ATACCTTTCT CGTCACGGTC
ACGCTCATGG GTGTCGCCAC GGCGGGCGTC GGCCTGATCC CCTCTGCCGC GACCATCGGC
CTTGCCGCAC CGGCCATCGT CATCCTGCTG CGCGTGCTGC AAGGGCTGGC ACTGGGTGGG
GAGTACGGCG GCGCTGCGAT CTATGTTGCA GAGCATGCAC CGGGCGGCCG TCGCGGCTAT
TACACCAGCT ACATCCAGGC CAGCGTCGTG GGCGGCTTCG TGCTGAGTCT GATCGTAGTC
CTGTCCAGCA AGGCGCTGAT GAGCGATGCC GTGTGGAACG ACTGGGGTTG GCGCGTGCCG
TTCCTGGTCA GCCTCGCGCT TCTCGCGATT TCGTTGTGGA TGCGCATGAA GCTGTCGGAA
AGTCCGGTGT TCCAGGCGAT GAAGGAGGAG GGCGAGCTTG CCGGTAATCC CTTCGTCGAA
AGCTTCACCT ACCCTGGCAA CAAGCGCCGC ATTTTCATCG CGCTGTTCGG CATCGCCGCC
GGGCTAACCG TGATCTGGTA CACGGCGATG TTCTCCGGCC TCAGCTTCCT CAAGTCTGCA
ATGCGCATGG AGGATACTCT GGCCGAGGTC GTCGTCGGTA TCGGCGCCAC ACTCGGAATG
GGCTTCTTCA TCTACTTCGG CTCTCTTTCC GACCGTATCG GCCGTAAGAA GCCCATCATC
ATCGGCTATG CCGTCACGCT GCTAATGCTC TTTCCCACGT TCTGGCTGAT GGGGGCCGCC
GCCAATCCGC AACTCGCCGA GGCGGCAGAG CGCAACCCGG TCGTCGTAGC CGGGCCTGAC
TGCAACTACA GCCCCTTTGC CTCTGAACAA GTCAGCAATT GCGGCAAGCT CCTGGCTGAC
CTGGCGGCGT CCGGTGTGTC TTATAGTCTG CGCGATGACG CTGTGTTTGG CATGACCGCA
GGTGGTTCAG CGGTTGATCT TGCCAGCTAT CCGTGGACGG ACAAGGCTGC TGCGCGCGCC
AAGGCGCTCC AGTCCGAGCT TTCCGCGCAT GGCTACGATT TCGCCAAGGT CCAGCCCTCG
CTCGGCCGGA TTGTCGCGGT TATCGGTGCG CTGCTGGCGC TCATGGCGAT GTCCGGTGCG
ACCTACGGGC CGGTGGCCGC CCTTCTTTCC GAGATGTTCC CGCCGCGCAT CCGATACAGT
TCGATGTCGA TCCCGTATCA TCTCGGCACG GGCTACTTCG GGGGTTTCCT GCCGCTGATT
TCCAGCTACA TCGTCGCGCG CACCGGCGAT CCCTATGCCG GGCTATGGTA CACTTGGGTG
GTCGTCCTGG TCGCGCTCCT CGTTGCGGCG TGGGGTTTGC GGCCAGGCCT GCCCGCCGAC
TTCACGGATG ACTGA
|
|---|
| Protein sequence | MCVNASVTKN DAAKPSASDI RLVIAASSAG TVFEWYDFFI YGTLASIIGR TFFPSDNATL
QVLLVWAGFA VGFGFRPLGA VLFGYLGDKL GRKYTFLVTV TLMGVATAGV GLIPSAATIG
LAAPAIVILL RVLQGLALGG EYGGAAIYVA EHAPGGRRGY YTSYIQASVV GGFVLSLIVV
LSSKALMSDA VWNDWGWRVP FLVSLALLAI SLWMRMKLSE SPVFQAMKEE GELAGNPFVE
SFTYPGNKRR IFIALFGIAA GLTVIWYTAM FSGLSFLKSA MRMEDTLAEV VVGIGATLGM
GFFIYFGSLS DRIGRKKPII IGYAVTLLML FPTFWLMGAA ANPQLAEAAE RNPVVVAGPD
CNYSPFASEQ VSNCGKLLAD LAASGVSYSL RDDAVFGMTA GGSAVDLASY PWTDKAAARA
KALQSELSAH GYDFAKVQPS LGRIVAVIGA LLALMAMSGA TYGPVAALLS EMFPPRIRYS
SMSIPYHLGT GYFGGFLPLI SSYIVARTGD PYAGLWYTWV VVLVALLVAA WGLRPGLPAD
FTDD
|
|---|
| |