Gene Saro_1931 details

Gene Information

• Locus tag: Saro_1931
• Symbol: hfq
• ID: 3917154
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 2045402
• End bp: 2045983
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640444677
• Product: RNA-binding protein Hfq
• Protein accession: YP_497205
• Protein GI: 87199948
• COG category: [R] General function prediction only
• COG ID: [COG1923] Uncharacterized host factor I protein
• TIGRFAM ID: [TIGR02383] RNA chaperone Hfq

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGGCA AGACGCTATC CGCCCGCCCT CGGCCCAAAC CCGAACCGGC ACCAGTGGCG 
GAAACTGCGC CGCCCGCACC CGTCACCGGG CCAAGCGGAG GGAAGGGGCA GAACCTTCAG 
GACCTGTTCC TCAATCACCT GCGCAAGAAC AAGATTCCGG TCACGATGTT CCTCGTGAAG 
GGCGTCAAGC TGCAGGGTAT CGTCACGTGG TTCGACAACT TTTCGATCCT TCTGCGCCGT 
GATGGCCAGT CGCAGCTCGT ATACAAGCAC GCGATCTCGA CAATCATGCC GGGTCAGCAG 
CTTTCGGTCG CCCATTTCCA GACCTCCGGT GAGGAGAACG GCAAGAAGGC CCGCCTCCTG 
CAGGAAGTCT TCCTGTCGAG CGTTCGCGAT TCCGGCGTCC AGGTGACGAT GTTCCTCGTC 
AATGGCGTCA TGCTTCAGGG CAAGGTCGCG TCCTATGATC TCTTCTGCAT GCTTCTGGAG 
CGTGAGGGCT ATGTCCAGCT CGCTTACAAG CATGCCGTTT CTACGATTCA GCCTGCCGGC 
CACGTCGATC TGACCGGGGA CTGGGATGGC GAGGATTCCT GA 

 

Protein sequence

MTGKTLSARP RPKPEPAPVA ETAPPAPVTG PSGGKGQNLQ DLFLNHLRKN KIPVTMFLVK 
GVKLQGIVTW FDNFSILLRR DGQSQLVYKH AISTIMPGQQ LSVAHFQTSG EENGKKARLL 
QEVFLSSVRD SGVQVTMFLV NGVMLQGKVA SYDLFCMLLE REGYVQLAYK HAVSTIQPAG 
HVDLTGDWDG EDS