Gene Saro_1835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1835 
SymboldapD 
ID3918395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp1933469 
End bp1934308 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content68% 
IMG OID640444577 
Product2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
Protein accessionYP_497109 
Protein GI87199852 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2171] Tetrahydrodipicolinate N-succinyltransferase 
TIGRFAM ID[TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0381342 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCCG CCTCGCTCGA AGCCGCAATC GAAGCCGCTT GGGAAGACCG TGCCAACGTC 
ACCCCGGCCA GCGATGCCGT TCGCGAAGTG GTCGAGGCCG CGCTCGAGCT GCTCGACAGC
GGCAAGGCTC GCGTCGCCGA GAAGATAGAC GGCCAGTGGC AGGTCAACCA GTGGCTGAAG
AAGGCCGTGC TCCTCTCGTT CCGCCTCAAC GACAATGCCG TGATCGATCA TGGCGCGGGC
GGCGCGCCTG CATTCGACAA GGTTCCGTCC AAGTTCTCCG GCTGGGGCGA GAACCGCTTC
CGCGAGGCCG GCTTCCGCGT CGTTCCCGGC GCTGTCGCGC GCAAGGGCGC GCACATCGGC
AAGGGCGTGG TCCTGATGCC CAGCTTCGTG AACATCGGCG CTTTCGTCGA CGAGGGCACG
ATGGTCGACA CCTGGGCGAC CGTCGGCTCC TGCGCGCAGA TCGGCAAGAA CGTCCACATC
TCGGGCGGTG CAGGCATCGG CGGCGTCCTT GAACCGCTCC AGGCCGGCCC CGTCATCATC
GAGGACGGCG CGTTCATCGG CGCGCGTTCG GAAGTGGCCG AAGGCGTGAT CGTGGGCGAA
GGCGCCGTGC TGTCGATGGG CGTCTATCTC GGCGCTTCGA CCAAGATCGT CGACCGCCAG
ACCGGCGAAG TCCACATCGG CCGCGTTCCG CCCTACGCTG TCGTCGTTCC CGGCGCGATG
CCCGGCAAGC CCCTGCCCGA CGGCACGCCC GGCCCCTCGC TCTACTGCGC CGTGATCGTC
AAGACGGTCG ATGCCCAGAC CCGCAGCAAG ACCGGAATCA ACGAACTCCT GCGCGATTGA
 
Protein sequence
MTAASLEAAI EAAWEDRANV TPASDAVREV VEAALELLDS GKARVAEKID GQWQVNQWLK 
KAVLLSFRLN DNAVIDHGAG GAPAFDKVPS KFSGWGENRF REAGFRVVPG AVARKGAHIG
KGVVLMPSFV NIGAFVDEGT MVDTWATVGS CAQIGKNVHI SGGAGIGGVL EPLQAGPVII
EDGAFIGARS EVAEGVIVGE GAVLSMGVYL GASTKIVDRQ TGEVHIGRVP PYAVVVPGAM
PGKPLPDGTP GPSLYCAVIV KTVDAQTRSK TGINELLRD