Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_1835 |
Symbol | dapD |
ID | 3918395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 1933469 |
End bp | 1934308 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640444577 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_497109 |
Protein GI | 87199852 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0381342 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGCCG CCTCGCTCGA AGCCGCAATC GAAGCCGCTT GGGAAGACCG TGCCAACGTC ACCCCGGCCA GCGATGCCGT TCGCGAAGTG GTCGAGGCCG CGCTCGAGCT GCTCGACAGC GGCAAGGCTC GCGTCGCCGA GAAGATAGAC GGCCAGTGGC AGGTCAACCA GTGGCTGAAG AAGGCCGTGC TCCTCTCGTT CCGCCTCAAC GACAATGCCG TGATCGATCA TGGCGCGGGC GGCGCGCCTG CATTCGACAA GGTTCCGTCC AAGTTCTCCG GCTGGGGCGA GAACCGCTTC CGCGAGGCCG GCTTCCGCGT CGTTCCCGGC GCTGTCGCGC GCAAGGGCGC GCACATCGGC AAGGGCGTGG TCCTGATGCC CAGCTTCGTG AACATCGGCG CTTTCGTCGA CGAGGGCACG ATGGTCGACA CCTGGGCGAC CGTCGGCTCC TGCGCGCAGA TCGGCAAGAA CGTCCACATC TCGGGCGGTG CAGGCATCGG CGGCGTCCTT GAACCGCTCC AGGCCGGCCC CGTCATCATC GAGGACGGCG CGTTCATCGG CGCGCGTTCG GAAGTGGCCG AAGGCGTGAT CGTGGGCGAA GGCGCCGTGC TGTCGATGGG CGTCTATCTC GGCGCTTCGA CCAAGATCGT CGACCGCCAG ACCGGCGAAG TCCACATCGG CCGCGTTCCG CCCTACGCTG TCGTCGTTCC CGGCGCGATG CCCGGCAAGC CCCTGCCCGA CGGCACGCCC GGCCCCTCGC TCTACTGCGC CGTGATCGTC AAGACGGTCG ATGCCCAGAC CCGCAGCAAG ACCGGAATCA ACGAACTCCT GCGCGATTGA
|
Protein sequence | MTAASLEAAI EAAWEDRANV TPASDAVREV VEAALELLDS GKARVAEKID GQWQVNQWLK KAVLLSFRLN DNAVIDHGAG GAPAFDKVPS KFSGWGENRF REAGFRVVPG AVARKGAHIG KGVVLMPSFV NIGAFVDEGT MVDTWATVGS CAQIGKNVHI SGGAGIGGVL EPLQAGPVII EDGAFIGARS EVAEGVIVGE GAVLSMGVYL GASTKIVDRQ TGEVHIGRVP PYAVVVPGAM PGKPLPDGTP GPSLYCAVIV KTVDAQTRSK TGINELLRD
|
| |