| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1402 |
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| Symbol | dapF |
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| ID | 3917857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 1444680 |
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| End bp | 1445507 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640444145 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_496680 |
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| Protein GI | 87199423 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0816431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAGT CGCGCGGCAT GCGCATTCCC TTCCGCAAGA TGCACGGGCT CGGCAACGAT
TTCGTGGTGA TCGACGCCCG CGAGGCGGCC GTTTCCATGA CCGCCGCGCG TGCGGCGGCG
CTCGCCGACC GCCGCACCGG CATCGGTTGC GACCAGCTGA TCGTTCTTGA ACCGTCGGAC
GTGGCCGACG TGCGGATGCG CATCTTCAAC AACGACGGCA GCGAGGTCGA GGCCTGCGGC
AACGCCAGCC GCGCCGTCGG CCTCCTCCTT GGCGGCACGC AATTCATTGA AACGCTTGGC
GGACTGATCC GTTCGGAAGC ACGGCCCGAT GGCGTCTCTG TAGACATGGG CGCGCCCCGT
CTGCGCTGGG ATGAAATCCC GGTCTCCTAT GCGATGGACA CGCTGGAAAT GCCGGTCGGC
TGGGAGGACC TGGAGAACCC GGTCGGAGTC AATGTCGGCA ACCCGCACGT GATCTTCTTC
GTGGACGATG CGGACGCCGT CGATCTCGCC CGTCTCGGCC CGCTGATCGA GAACGATCCG
CTTTTTCCCG AGAGAATCAA CGTCAATGTC GCCAGCGTGG TTGGCCCCGA CCATCTCAAG
CTGCGCGTGT GGGAACGCGG TGCCGGTCTT ACCCGGGCCT GCGGAACCGG CGCCTGCGCG
ACGGCGGTCG CCGCGATCCG CCGCAAGCTG ACGGGCCGCA AGGTCCGGAT CGACCTGCCC
GGCGGCCCGC TCACCATCAC CTGGCCTGAA GGCGGGACCA TCGATATGAC CGGGCCTGCG
ACGCTGAGCT TCGAAGGCGC GTTCGAGGAC TCAGACTTCC CGGCATGA
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| Protein sequence | MPKSRGMRIP FRKMHGLGND FVVIDAREAA VSMTAARAAA LADRRTGIGC DQLIVLEPSD
VADVRMRIFN NDGSEVEACG NASRAVGLLL GGTQFIETLG GLIRSEARPD GVSVDMGAPR
LRWDEIPVSY AMDTLEMPVG WEDLENPVGV NVGNPHVIFF VDDADAVDLA RLGPLIENDP
LFPERINVNV ASVVGPDHLK LRVWERGAGL TRACGTGACA TAVAAIRRKL TGRKVRIDLP
GGPLTITWPE GGTIDMTGPA TLSFEGAFED SDFPA
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