| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0578 |
|---|
| Symbol | |
|---|
| ID | 3915590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 624133 |
|---|
| End bp | 625935 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640443308 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_495859 |
|---|
| Protein GI | 87198602 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.1977 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAATC AGCGCAACCT CATCATGGCA GTGGTCCTTA CCGGCATCCT GCTGCTCGGC
TGGGACGTCG CGATGCGCTG GTTCTACCCG CAGCCGGCGC AAAAGCCCAA GGTCGAAGCC
GCCGCATCGG CAGAACCCGC CAATGGCGAA AAGCCCAAGC GCACGCGCGA AGGCGGCCTC
CAGAACGCGG GCGACATCGC GCTCGAGAAG AAGGACCTGG CCCAGGAACT GGCGGCCGGT
CACCGCATCG CCATCGATGC GCCGGGCCTC AAGGGCTCGA TCAATCTCAA GGGTGCGCTG
GTCGATGACG TGACGCTCGC GCGCCACCGT GAAGGCGTGG ACAGGAACAG CGCTCCCGTG
CGCCTGTTCT CGCCCGCTGG CACCCCCGCG CAGCACTTTG CCCAGATCGG CTGGGTCGGT
GAAGGCGTCG CAGCGCCCGA TGCCAACACC ATGTGGCAGG CCGATGGCGC GAAGCTTACC
CCCCAGACTC CGGTCACGCT GCGCTGGACC AACGCTTCGG GACAGACCTA CTCGATCCGC
TATGCGATCG ACGGCGACTA CATGATCACG GCGACGCAGG GCGTCGCCAA CACCGGTCCC
GCGCCGGTCG TCGTCAGGCC TTTCGCGCTG GTCAACCGCA CCGACAAGAC CGCCAGCCTC
GATACCTGGA ACGTCCATTC CGGCCCGATC GGCGCGTTCG ACGGCTCGGT GAACTTCGAC
AACAACTACT CGACCGTGGC CGAGGCCGAA GGCGGCGCGA TTCCCTTCAA GGGCACCGCC
AACTGGATCG GCTTTACCGA CATCTACTGG CTCTCGGCGC TGATCCCCGA TGCCAATGCC
AAGGCAGAAG CCGCGTTCCG CTCGCTCGGC CAGGGCGTCT ATCGCGCCGA TCTCATCTAT
CCGTCGGTCT CGATCGCGCC GGGCAAGGCG CTGAGCCAGA CCGTGCGTCT CTTCGCCGGC
GGCAAGGAAA ACGCGGTTCT CGAGAAGTAC GAGGCTGCGG GCGTCACCAA TTTCAGCCTG
TCCATCGACT GGGGCTGGTT CCGCTGGTTC GAGAAGCCGA TCTTCTGGCT GCTCGATTCG
ATCTTCAAGA AGGTCGGCAA CTTCGGCGTC GCGATCATCC TGCTCACGCT CATCGTGCGC
GGCGTGATGT TCCCGATTGC CCAGCGCCAG TTCGCCTCGA TGGCGGCGAT GCGCGCGCTC
CAGCCCAAGA TGAAGGCGAT CCAGGAGCGC TACAAGGACG ACAAGCAGAA GCAGCAGCAG
GAAATCATGG AGCTGTACAA GCGCGAGAAG GTAAATCCTC TCGCCGGTTG CCTCCCCATC
TTCCTGCAGA TCCCGGTGTT CTTCGCGCTC TACAAGGTGC TGGTCCTGAC CATCGAAATG
CGTCACCAGC CTTTCGCGCT GTGGATCAAG GACCTTTCCG CGCCCGATCC GCTGCACGTG
CTGAACCTGT TCGGCCTGCT TCCGTTCGAT CCGCCCAGCT TCCTCGGCAT TGGCGTGCTG
GCGATCCTGC TTGGCATCAC CATGTGGCTC CAGTTCAAGC TGCAACCCGC GGCAATGGAC
CCGGCGCAGC AGCAGGTCTT CGCGTTCATG CCGTGGATCA TGATGTTCGT CATGGCCCCC
TTCGCGGCCG GCCTGCTGAT CTACTGGATC ACCTCGAACC TGCTGACCAT CGCGCAGCAG
AAGTATCTCT ACAGCCGCCA CCCGCAGCTC AAGGCGCAGG CCGACAAGGA CCAGGTCGAC
ATCGACCGCG CCGTCACTCG TGAAAAGAAG GCGACTTCCA CCCGGAAGCC GAAGGCGCGT
TGA
|
|---|
| Protein sequence | MQNQRNLIMA VVLTGILLLG WDVAMRWFYP QPAQKPKVEA AASAEPANGE KPKRTREGGL
QNAGDIALEK KDLAQELAAG HRIAIDAPGL KGSINLKGAL VDDVTLARHR EGVDRNSAPV
RLFSPAGTPA QHFAQIGWVG EGVAAPDANT MWQADGAKLT PQTPVTLRWT NASGQTYSIR
YAIDGDYMIT ATQGVANTGP APVVVRPFAL VNRTDKTASL DTWNVHSGPI GAFDGSVNFD
NNYSTVAEAE GGAIPFKGTA NWIGFTDIYW LSALIPDANA KAEAAFRSLG QGVYRADLIY
PSVSIAPGKA LSQTVRLFAG GKENAVLEKY EAAGVTNFSL SIDWGWFRWF EKPIFWLLDS
IFKKVGNFGV AIILLTLIVR GVMFPIAQRQ FASMAAMRAL QPKMKAIQER YKDDKQKQQQ
EIMELYKREK VNPLAGCLPI FLQIPVFFAL YKVLVLTIEM RHQPFALWIK DLSAPDPLHV
LNLFGLLPFD PPSFLGIGVL AILLGITMWL QFKLQPAAMD PAQQQVFAFM PWIMMFVMAP
FAAGLLIYWI TSNLLTIAQQ KYLYSRHPQL KAQADKDQVD IDRAVTREKK ATSTRKPKAR
|
|---|
| |