Gene Saro_0318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0318 
Symbol 
ID3915560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp342540 
End bp343523 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content70% 
IMG OID640443047 
Producttype II secretion system protein E 
Protein accessionYP_495600 
Protein GI87198343 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID[TIGR02782] P-type conjugative transfer ATPase TrbB 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0504933 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTCA TTCCGATCCG GTCCGAGGCA GCAACGCGCG GTGCGCGCAT GCTCCGCACG 
GCGCTCGGGC CCGAGATCGG GGCCTGGCTG GAAGATCAGG CGGTCATCGA AGTCATGCTC
AATCCTGACG GACGGCTCTG GGTCGACCGG CTCGGGCTTG GGATTGCCGA TACGGGCGCG
GTGCTGTCCG CCGCCGATGG CGAGCGGATC ATCCGCCTTG TCGCGCATCA TGTGGGCGCC
GAGGTGCACT CAGGCGCGCC GCGGGTCTCG GCGGAATTGC CCGGGACGGG GGAGCGATTC
GAGGGGCTGT TGCCGCCGGT GGTGGCAGCG CCCAGCTTCG CGATCCGCAA GCCGGCCGGC
GCGGTGTTCA CACTGGCAGA CTATGTCGCG GCCGGGATCA TGCCGGCGGC ATCCGCCGAT
GCTCTTGCTG CCGCGGTCGC GGCGCGGGCC AATATCCTCG TCGCGGGCGG GACGTCGACC
GGCAAGACGA CGCTGACCAA TGCTCTCCTC GCCGAGGTCG CCCGGACCGG CGACCGGGTG
GTGCTGATCG AGGATACGCG CGAGCTGCAA TGTGCCGCGC CCAATCTGGT GGCGCTGCGC
ACCAAGGATG GCGTGGCCTC GCTTGCCGAT CTGGTGCGTT CGGCCCTGCG CCTGCGCCCT
GACCGGATCC CCATCGGCGA GGTACGCGGC GCCGAGGCGC TCGATCTCCT CAAGGCCTGG
GGCACCGGGC ATCCCGGCGG GGTCGGAACG ATCCATGCAG GCTCTGCGCT CGGCACGCTG
CGGCGGCTCG AGCAGCTGAT CCAGGAAAGC GTGGTCACGG TGCCGCGCGC CCTCATTGCC
GAGACGATTG ATGTCATCGC CGTGCTCGTC CGCGACGGCA CCGGTCGGCG CCTGTCCGAG
CTGGTCCGCA TCGAAGGCCT CGATGCCGCC GGTGACTACC GCCTCGTCCC CCTTGTCCCT
GCAACCGAAG GAGAATGCCC GTGA
 
Protein sequence
MSVIPIRSEA ATRGARMLRT ALGPEIGAWL EDQAVIEVML NPDGRLWVDR LGLGIADTGA 
VLSAADGERI IRLVAHHVGA EVHSGAPRVS AELPGTGERF EGLLPPVVAA PSFAIRKPAG
AVFTLADYVA AGIMPAASAD ALAAAVAARA NILVAGGTST GKTTLTNALL AEVARTGDRV
VLIEDTRELQ CAAPNLVALR TKDGVASLAD LVRSALRLRP DRIPIGEVRG AEALDLLKAW
GTGHPGGVGT IHAGSALGTL RRLEQLIQES VVTVPRALIA ETIDVIAVLV RDGTGRRLSE
LVRIEGLDAA GDYRLVPLVP ATEGECP