| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0238 |
|---|
| Symbol | |
|---|
| ID | 3917587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 246695 |
|---|
| End bp | 248005 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640442963 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_495520 |
|---|
| Protein GI | 87198263 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.489939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGC CGATGGGTCT GGTTGCCGTT CTCGCGCTCG TCGGAACCGC CGCACATGCA
GCGCCCAAGG GTGCCGAGGC ACGCATGATT GCCACCGTCG ATGCCGAGCA GGCGCGCACG
TTGAGGTTCC TCGAAGTGAT GGTCAACCAG AACTCGGGCA GCCGCAACCT CGAAGGCGTG
CGAAGGTTGC GCGACATTGT CGTGCCCGAA TTCACCGCGC TGGGCTTCAC GTCCCGCTGG
ATCCCGATGG AACGGACCGG CCGGGCCGGG CACCTCGTCC TCACCCACAA GGGCCGCCAA
GGCGCGAAGA AGCTTCTGCT GATCGGCCAC CTCGATACCG TGTTCGAACC TGACTCCCCC
TTCCAGACCT ATGTCCTGAA CGGCGAAAAG GCGACCGGCC CTGGCGTCGG CGATGACAAG
GGTGGCATCG CCGTGATCCT CGCTGCGGTC CGCGCCATGA ACGCTGCAGG AACGCTGAAG
GGCGCCAGCA TCGAAGTCTT CCTTACCGGC GACGAAGAGG AGGCAGGCTC TCCCACCGAA
GTCGCCCGCG CCGATCTCGT TGCCGCCGCC AGGGCCGCCG ACGTCGCGCT GGATTTCGAA
GGCCTCTCCA GAGAGAACGG CCGCGACATG GGCTCGATCG CCCGCCGATC CTCGCAAAGC
TGGTCTTTGA CGGTCGAGGC GAAGTCCGGC CACTCCAGCG GCGTCTGGGG CGCAAACGCG
GGCGATGGCG CGATCTATGC CGCCGCGAAG ATCGTGAATG CCTTCCGCAC CGAACTGCCC
GAACCCTGGC TTACCCTCAA CGTCGGCCTG ATCGCGGGCG GGGCGGAGGC AGAGGTCGCC
GAGGACAACG CCCACGTCTC GGCACAGGGC AAGACCAATA TCATACCGGG CGAGGTCATC
GCCCGCGGAG ACCTGCGCAC CCTCAGTCCC GAACAGAACC GCGCCGCCAT GCGCAAGATG
GAGGAGATCG TCGGCAGGCC CTACCCCGGC GTCACCTCAG CCCGCATCGC ATTTAGCGAA
GGCTACCCGC CCATGGCCCC GACCGAAGGC AACAAGGCGT TGCTGGCCCG CCTGAATCAG
GTCAACGCCA CGCTTGGCTT GCCCGAAATG CAGCCGCTCG ATCCGATGAA GCGCGGGGCC
GGGGACATCA GCTTCGTCGC GGAATACATC GACGGCCTCG TCGGCCTCGG CCCGCACTCC
ACCGGCGATC ACGCGCCGGG CGAAACGGTC GACGTCCCCA GCATCTGGAC CCAGGCCAAG
CGCGCCGCCC TGCTGATGAC CCGGCTCTCG GCGGAGAAGT CCGCGCGGTG A
|
|---|
| Protein sequence | MRLPMGLVAV LALVGTAAHA APKGAEARMI ATVDAEQART LRFLEVMVNQ NSGSRNLEGV
RRLRDIVVPE FTALGFTSRW IPMERTGRAG HLVLTHKGRQ GAKKLLLIGH LDTVFEPDSP
FQTYVLNGEK ATGPGVGDDK GGIAVILAAV RAMNAAGTLK GASIEVFLTG DEEEAGSPTE
VARADLVAAA RAADVALDFE GLSRENGRDM GSIARRSSQS WSLTVEAKSG HSSGVWGANA
GDGAIYAAAK IVNAFRTELP EPWLTLNVGL IAGGAEAEVA EDNAHVSAQG KTNIIPGEVI
ARGDLRTLSP EQNRAAMRKM EEIVGRPYPG VTSARIAFSE GYPPMAPTEG NKALLARLNQ
VNATLGLPEM QPLDPMKRGA GDISFVAEYI DGLVGLGPHS TGDHAPGETV DVPSIWTQAK
RAALLMTRLS AEKSAR
|
|---|
| |