Gene RPB_4648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4648 
Symbol 
ID3912465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5255477 
End bp5258179 
Gene Length2703 bp 
Protein Length900 aa 
Translation table11 
GC content69% 
IMG OID637886552 
Productosmosensitive K+ channel signal transduction histidine kinase 
Protein accessionYP_488242 
Protein GI86751746 
COG category[T] Signal transduction mechanisms 
COG ID[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACCT CGACCGCCAC CGCACGCGCT TCACCCGACG CCCTGCTGGC CCTCGCCGGC 
AAGGAAGGGC GCGGCCGGCT CAAGATCTTT GTCGGCGCCG CGCCCGGCGT CGGCAAGACC
TATGCGATGC TGTCTGCTGC GCGCAGCGAG CGGGATGGCG GCCGTGACGT GGTGGCGGGA
TTGATCGAGA CCCATGGCAG GCTCGAGACC GAACACTTGC TGCAGGGCAT CGAAGTGCTG
TCGCGGCACC CGATCGTTTA TCGCAACCGG GTGATGCGCG AATTCGACCT CGACGGCGCG
CTGGCGCGCA AGCCTTCGTT GCTGCTGGTC GACGAATACG CCCACACCAA CGTGCCGGGC
AGCCGCCATC CGAAGCGCTG GCAGGACATC GACGAACTGC TCGCCGCCGG CATCGACGTC
TGGACCACGC TGAACATCCA GCATCTCGAA AGCCTCAACG ACGTCGTGCT GAAGATCAGC
AAGATCCGCG TGCGCGAGAC GGTGCCCGAC AAGGCGTTCG ACCGTGCCGA CGAGATCGTG
CTGGTCGACC TGCCGCCGGA CGAACTGCTG AAACGCCTCG CCCAGGGCAA GGTCTACGTC
CAGGACACCG CGGCGCGCGC GGTCGAGAGC TTCTTCAAGC CGCAGAATCT CACCGCGCTG
CGCGAACTGG CGATGCGCCG CGCCGCCGAG CGGGTCGACG CCGCTTTGGT CGAGCGGATG
CAGGCGCACG CGATCGAAGG GCCGTGGGCC GCCGGCGAGC GCATCCTCGC CTGCGTCGGT
CCGGACACCG GCTCGCCCGG CGTGGTGCGC ACCGCCAAGC GGCTCGCCGA CCTGATGGAC
GCGCCGTGGA TCGCGGTGAC GGTCGAACGC TCCGGCGTCA ATCCCGACTC CGCGGCGCGC
CGGCAGATCG ACGAGGCGCT GAAGCTCGCC GAGAGTCTCG GCGCCGAGAC CCATACGCTG
ACCGGCAACG ACATTCCCGA CGAGCTGCTG CGCTTCGCCC GTTTCGAAAA CGTCACCCAG
ATGGTGATCG GCCGCGCCCG CGGCGGCGCG CTGCGGCAAT GGCTCGCGGG CTCGCTGCCG
CAGCAATTGA TGCAGCGCTC GACCGACATC GCCATCCATC TGGTGCCGGT GCAGGGGGAA
CCCGCCGAAC GCGACAGCCG CTCGCTCGCG GCACGGCTGA ATGCGTCCAA GCCGGCGCAT
TTTGTCTATG CGACCGTCGC GGTCGCCGGC GCGGTGGCGG TCGGCAAGGC GTTCGCACAG
GCGATCCCGA CGGCGAGCCT GTCGGTGGTG TTCCTGATGG CGGTGCTGTT CAGCGCGGTG
AAGTCCGGTG TCGGCCCGGC GATCTTCGCC TCGGTGCTGT CGTTCTTCAC TTACAATTTC
TTCTTCATCG CCCCGCTCTA CACCTTCACC GTCGCGGAGC CCTACGAACT GCTGGCGCTG
CTGATGTATC TGGTGGTCGC GATCGTCGCC GCGACGCTTG CCGGCCGGCT GCGTGATCAA
GCGCGGATCT CCGCAGGCCG GGTTCGGGCG ATGCGGAGAC TCTACGAGTT CACCCGCCGG
TTGTCGGGGC TCGCCACCAG CGATGATATC GCCGAAGGCG CGGCGAGCGA AATCCACGCC
AGCCTGGGCC GCCCGGTGAT GGTGATGCTG CCGCGCGAGG ACGATCTGGT GCTGGCCGCA
GCCTGGCCGC CGGAGGACGC ACTCGACGAG GCGGCGATGA TGGCGGCACG TTGGGCCTTC
ACCCACAATG AACCCGCCGG CTTCGACACC GGCACGCTGC CGATCGTGCC GTGGCGTTTC
CTGCCGGTGC GCACCGGCGC CACCACCTAC GGCGTGATCG GCGTGATGCA GAAGAAGGAC
AGCGCTGCGC TCGACTCCGA GGCCCAGGCA CTGCTCGATA CACTCACCGA ACAGACCGCG
GCCGCGCTGG AGCGCGCCGC ATTGACGCGC GACATGGTGA GGGCGCGGAC GGCGACCGAG
ACCGAGCGCG TCCGCAACAC CTTGCTGGCT TCGATTTCGC ACGACTTCCG CACACCGCTG
TCCTCGATCC TCGGCTCGGC CACCAGTCTG TCCACCTTTG GCGACAAGCT CGACGACGCC
GCGACCCGCG ACCTGCTCGC CAATATCCGC GAGGAGGCCG AAGGCCTCGA CGAGATGGTG
CGCAACCTGT TGTCGATCAC CCGGATCGAA TCCGGCGCGC TCGAACTGCG CCGCGACTGG
GTCGATCTGC GCGAGATCGC CGCACGCGTG ATCGAAGCGG CACGGCGGCG CGGCGCGGCG
CAACACATAG ACCTCGACTG CCCGGCCGAT AGTCCGCTGG TGCGGGCCGA CGCGGCGCTG
GTCGAACAGG CGCTCGGCAA CATCGTCGCC AATGCCGTTG CGCACACGCC GCCAACGTCG
CACATCCTGA TCGACGCCGA GAACGACGCG TCATCGGTGA AGCTGCGCGT CACCGACGAC
GGCCCGGGCG TTGCCGTGGC CGATCTGCCG CGCATCTTCG ATCGCTTCGT GCGCAGCGCC
AGCGGCACCG CGCCGTCCTC GAGTCGCGGC CAGGGCGTCG GATTGGGACT GGCCATCGCC
AAGGGAATCA TGGAAGCGCA TGGCGGCGCG GTGTCCGCGC TCAGCCCCGT CGCGAACGGG
CACGGCACGC GCTTCGTGCT CACCTTCATG CGCGACAGGA CACAGGAGAC GCCGCAGCCA
TGA
 
Protein sequence
MSTSTATARA SPDALLALAG KEGRGRLKIF VGAAPGVGKT YAMLSAARSE RDGGRDVVAG 
LIETHGRLET EHLLQGIEVL SRHPIVYRNR VMREFDLDGA LARKPSLLLV DEYAHTNVPG
SRHPKRWQDI DELLAAGIDV WTTLNIQHLE SLNDVVLKIS KIRVRETVPD KAFDRADEIV
LVDLPPDELL KRLAQGKVYV QDTAARAVES FFKPQNLTAL RELAMRRAAE RVDAALVERM
QAHAIEGPWA AGERILACVG PDTGSPGVVR TAKRLADLMD APWIAVTVER SGVNPDSAAR
RQIDEALKLA ESLGAETHTL TGNDIPDELL RFARFENVTQ MVIGRARGGA LRQWLAGSLP
QQLMQRSTDI AIHLVPVQGE PAERDSRSLA ARLNASKPAH FVYATVAVAG AVAVGKAFAQ
AIPTASLSVV FLMAVLFSAV KSGVGPAIFA SVLSFFTYNF FFIAPLYTFT VAEPYELLAL
LMYLVVAIVA ATLAGRLRDQ ARISAGRVRA MRRLYEFTRR LSGLATSDDI AEGAASEIHA
SLGRPVMVML PREDDLVLAA AWPPEDALDE AAMMAARWAF THNEPAGFDT GTLPIVPWRF
LPVRTGATTY GVIGVMQKKD SAALDSEAQA LLDTLTEQTA AALERAALTR DMVRARTATE
TERVRNTLLA SISHDFRTPL SSILGSATSL STFGDKLDDA ATRDLLANIR EEAEGLDEMV
RNLLSITRIE SGALELRRDW VDLREIAARV IEAARRRGAA QHIDLDCPAD SPLVRADAAL
VEQALGNIVA NAVAHTPPTS HILIDAENDA SSVKLRVTDD GPGVAVADLP RIFDRFVRSA
SGTAPSSSRG QGVGLGLAIA KGIMEAHGGA VSALSPVANG HGTRFVLTFM RDRTQETPQP