Gene RPB_4637 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4637 
Symbol 
ID3912454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5241547 
End bp5242389 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content67% 
IMG OID637886541 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_488231 
Protein GI86751735 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGACGGC TGAACGGCAA GGTCGCGGTG ATCACCGGCG CGACCAGCGG GATTGGTCTG 
CGCACGGCCG AGGTCTTCGT CGCCGAGGGT GCTCACGTCG TGATCGCCGG CCGGCGTGCC
CCGGAGGGAG AGGCGCTGGC GGCAAAGCTC GGGCCGTCCT GCATTTTCAG GCAGACCGAC
GTCACCGCAG AGGATCAGAT GAAGGCGCTG ATCGGCCAGG CGATCGACTC CTTCGGCCGG
ATCGATTGCC TGTTCAACAA TGCCGGCGGC CCGGCGCAGA CCGGCGGCAT CGAAGGCCTC
GAGGCCGACC GGTTCGATGC TGCGATGGCG ACGCTGGTGC GCAGCGTGAT GCTCGGCATG
AAGCATGCCG CGCCGCACAT GAAGAAACAG GGCTCGGGCT CGATCATCAA CAACGGCAGC
ATCGCCGGCC GGCTCGCCGG CTTCTCGTCA TCGCTGGTGT ACGGCGCCGC CAAGGCGGCG
GTGATCCATC TCACAAAATG CGTCGCGATG GAGCTCGGCG AGTCCGGCGT CCGGGTCAAT
TCGATCTCGC CCGGTGCGAT CGCGACCGGC ATCTTCGGCA AGGCGCTCGG CCTGACCACC
GAGGCCGCGG AGAAAACCTC GGCGACGATG CGCGAAATCT ACAAGACCGC GCAGCCGATC
CAGCGTGCAG GACTACCCGA AGACATCGCG CACGCCGCGG TGTTTCTCGC CAGCGACGAG
TCGGGCTTCA TCAACGGCCA CGACCTGGTG ATCGACGGCG GCATCACCGG CGGCCGCAAC
TGGACGCAGC AACAGCAGGG CTACGTCGCG CTGCGCAAGG CGTTCGATCA CGGCGAGGGG
TGA
 
Protein sequence
MGRLNGKVAV ITGATSGIGL RTAEVFVAEG AHVVIAGRRA PEGEALAAKL GPSCIFRQTD 
VTAEDQMKAL IGQAIDSFGR IDCLFNNAGG PAQTGGIEGL EADRFDAAMA TLVRSVMLGM
KHAAPHMKKQ GSGSIINNGS IAGRLAGFSS SLVYGAAKAA VIHLTKCVAM ELGESGVRVN
SISPGAIATG IFGKALGLTT EAAEKTSATM REIYKTAQPI QRAGLPEDIA HAAVFLASDE
SGFINGHDLV IDGGITGGRN WTQQQQGYVA LRKAFDHGEG