| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4565 |
|---|
| Symbol | |
|---|
| ID | 3912382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 5164042 |
|---|
| End bp | 5164716 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637886469 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_488159 |
|---|
| Protein GI | 86751663 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.156913 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC CCGCCAGCAC GCATTTGATC ATTGCCGATG ACCACCCGCT GTTCCGCGAC
GCCTTGCGGT TGGCGGTTTC CAGCGTCGTT CCCGGTGCGA AGATCGGCGA GGCCGGGTCG
TTCGAGGACC TCACCGCGAT GCTCGAGCGC GACGGCGACG TCGATCTTGT CCTGCTCGAC
CTGAAGATGC CCGGGATCAG CGGATTTTCC GGGCTGATCT ATCTGCGCGC GCAGTATCCG
GCGATCCCCG TCGTGGTGGT CTCGGCCAGC GACGATGTCG AGACCATCCG GCGCTCGCTG
GATTTCGGCG CGTCCGGTTT CGTGCCGAAG CGGTTCGGGG TCGAGAAGCT CGGCGACGCG
ATCCTGCGGG TGCTGGACGG CGACGTCTGG GTGCCGCCGG ATGTCGATCT GTCGGCGGCC
GCCGATCCGG AGACCAGCAA GCTGCGCGAC CGGCTGGTGA CGCTGACACC GCAGCAGGTG
CGGGTGCTGA TGATGCTGTC CGAAGGGCTG CTCAACAAGC AGATCGCCTA CGAGCTCGGC
GTCTCGGAAG CCACCATCAA GGCGCATGTC TCGGCGATCC TGCAGAAGCT CGGCGTCGAA
AGCCGCACCC AGGCGGTGAT CGCCGCGGCG AAGATCTCCG GCAGCCAGTG GCGCCAGGAC
GAGCCGGTGG CGTAG
|
|---|
| Protein sequence | MSTPASTHLI IADDHPLFRD ALRLAVSSVV PGAKIGEAGS FEDLTAMLER DGDVDLVLLD
LKMPGISGFS GLIYLRAQYP AIPVVVVSAS DDVETIRRSL DFGASGFVPK RFGVEKLGDA
ILRVLDGDVW VPPDVDLSAA ADPETSKLRD RLVTLTPQQV RVLMMLSEGL LNKQIAYELG
VSEATIKAHV SAILQKLGVE SRTQAVIAAA KISGSQWRQD EPVA
|
|---|
| |