Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4564 |
Symbol | |
ID | 3912381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 5160324 |
End bp | 5163833 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637886468 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_488158 |
Protein GI | 86751662 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.519353 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGCACG ATTGGGGCGT GATCGCAGCC GCGCTCGCCT ATATCGGCTT CCTCTTCTAT GTCGCGAGTT TCGGCGACCG GCTGTCGCAA GGCCAGCGCG AGCGCGCCGG TGGCCTGATC TATCCGCTGT CGCTGGCGAT CTACTGCACC TCCTGGACGT TCTTCGGCTC GGTCGGCTTC GCCAGCCGCA CCAGCATCGA CTTCCTCGCG ATCTATGTCG GGCCGATCCT GCTGATCGGC GTGTTCACGC CGCTGCTGCG TCGCGTCATC CGGCTGGCGA AATCGCAGAA CATCACCTCG ATCGCCGACT TCATCGCCGC CCGCTACGGC AAGAGCCAGA AGGTCGCCGC CACGGTGGCG ATCATCGCCA TCATCGGCTC GGTGCCCTAC ATCGCGCTGC AGCTCAAGGC GGTGGCATCG TCGCTGCAGA CCATCCTCGG CGACGATCAC AACATCGCCG AAATTCCGAT CGTCGGCGAC ATGGCGCTGA TCGTGGCGAT CCTGATGGCG CTGTTCGCGG TGCTGTTCGG CGCCCGCCAG GCCAGCGCCA CCGAGCATCA GCACGGCCTG ATGCTGGCGA TCGCCACCGA ATCGATCGTC AAGCTGGTGG CGTTCATCGC TGCGGGGGTC TTCGTCACCT TCTGGATGTT CAGCCCGGCC GATCTGATCG AGCGGGCGAT GAAGATGCCG GAAGCGGTGC GGGTGCTCGA ATCGACGCCG TCGGCCACCA CCTTTCTGAC CATGACGGTG CTGTCGTTCT GCGCCTTTCT GATGCTGCCG CGGCAGTTCT ATGTCGGCGT GGTGGAGAAC ACCAACGACG CCGAGGTCAG CCGCGCCCGC TGGATGTTCC CGCTGTATCT GATCGCGATC AATCTGTTCG TGATCCCGAT CGCGCTGGCG GGGCTGGTGA AATTTCCGTT CGGCGCGGTC GACAGCGACA TGTTCGTGCT GGCGCTGCCG ATCGAGGCCA ATGCGCCGCT GCTCAGCTTC ATGGTGTTCA TCGGCGGCCT GTCGGCGGCG ACCGCGATGG TGATCGTCGA ATGCGTGGCG CTGGCGGTGA TGGTGTCGAA CGATCTGGTG ATGCCGCTGG TGCTGAAGCG CCACGGCGCG CCGCGCAACG ACCAGCGCAG CTTCGGCGGC TTTCTGCTGA CGGTGCGGCG GGTCGCCATC TTCGCGATCC TGATCCTGGC CTATCTGTAT TACCGCGCGC TCGGCAACAC CCAGCTCGCC GCCATCGGCC TGTTGTCCTT CGCGGCGATC GCGCAGTTCG CGCCGGCGTT CTTCGGCGGG CTGATCTGGC GCCGCGCCAC CGCGCGTGGC GCGATCGGCG GCATGATGAT CGGCTTCGCG GCCTGGGCCT ATACGCTGTT CATCCCGAGC TTCATGGAGG GCAGCACCGC GGGACTCGTG CTGTTGCAGC AAGGCCCGTG GGGAATCGAA GCGCTGCGGC CCCGGGCGCT GTTCGGCGCC GAATTGCCGC CGCTGGTGCA CGGCGTGGTG TGGAGCCTGT CGCTCAATCT GTTCGCCTAT ATCGCGCTGT CGCTGCTGAG CCGGCCGTCG TCGATCGAGC GGCTGCAGGC CGAAGTGTTC GTGCCGGACA CGCTGACGCC GATGACGCCG GCGTTCCGGC GCTGGCGCAC CACCGTGACG GTGCAGGATA TTCTCGGCGC GGTCGGGCAG TATCTCGGGC CGGAGCGGGC GCGGGACTCG TTTCGGTCGT TCGCGATCAG CCGCCGGTTG ACGCTCGACC CGGCGGCGCC GGCGGATTTC GAACTGTTGA AGCACGCCGA GCACTTGATC GCGTCCTCGA TCGGGGCGGC GTCGTCGCGG CTGGTGCTGT CGTTGCTGCT GCGCAAGCGC ACCGTGTCGG CGGAAGCCGC GCTGAAGCTG CTCGACGACT CCCACGCGGC GCTGCATTTC AACCGCGAGA TCCTGCAGAC CGCGCTCAAC CACGTCCGCC AGGGCATCGC GGTGTTCAAC CCGGAGCTGC AGCTGATCTG CTCCAACCGG CAGTTCGGCG AGATCCTCGG GCTGCCGCCG CACATCATCC AGATCGGCAT CCCGCTGATC GAGATCCTCG AATTCCTGTC GAGCGCCAGC GCCGGATCGG CCGATACAGA AGCGCAGACC CAGATGCGGC TCGCGTCCTA TACCACCGAG GGCGAGCCGT TCCTGGAACG GCTGCACGAC CGCCATCTGG TGATCGAGGT CCGCGCCAAC CGCATGCCGG ACGGCGGGCT GGTGATCACT TTCTCCGACG TCACCCCGAG CTTCGAGGCG GCCGAGGCGC TGGAGCGCGC CAATGCCACG CTGGAGCGGC GGGTGCGCGA ACGCACCGAG GAACTGACCC GGCTGAACTC GCAGCTCGCG CTGGCCAAGA GCACCGCCGA GGAAGCCAAC ATCTCCAAGA CCCGGTTTCT GGCGGCGGCG AGCCACGACA TCCTGCAGCC GCTCAACGCG GCGCGGCTGT ACGCCACCAG CCTGGTCGAG CGTCAGAACG GCGGCGAGGA TTCGCGCCTG GTCGAGAACA TCGACGAATC GCTCGAGGCG ATCGAGGAGA TCATCGGCGC GCTGCTCGAC ATCTCGCGGC TCGACGCCGG CGCGATGACG CCGTCGCTGA CCAATTTCGT CATCGGCGAT CTGATGCGCT CGCTGGAGAT CGAATTCGCC CCGACCGCGC GCGCCAAAGG TCTGCAACTC ATCTTCGTGC CGTGTTCGCT TCCGGTGCGG TCGGACCGTC TGATGCTACG CCGGCTGATG CAGAACCTGA TCTCCAACGC GATCAAATAC ACGCCGCAGG GCCGCGTGCT GGTCGGCTGC CGCCGCCAGG GCGAGTCCTT GAAGATCGGC ATCTACGACA CCGGCGTCGG CGTGCCGATC CTCAAGCGCG GCGAGATCTT CAAGGAATTC CACCGGCTCG AACAGGGCGC CCGGATCGCC CGCGGCCTCG GCCTCGGGCT GTCGATCGTG GAGCGGCTGG CGCGGGTGCT GAACCACGGC ATCACGCTCG ACGCCAATCG CGGCGGCGGC TCGTGTTTCG CCGTCACCGT TCCGGTCGCC GCCGTCGTCA ACCACACCAC CGCGGTGACC AGCGCGACGC CGCTGTCGCG CGCCTCGATG GCCGGCAGCC TGGTGGTGTG CATCGAGAAC GATCCGGCGA TCCTCGACGG CATGAAGACG CTGCTGACGA CCTGGGACGC CAGCGTGATC GCGGTGGCCG ATCCGGACGC GGCGATCAAG GCGATCGAGT CGGCCGACCG GCGCATCACC GGGCTGCTGG TCGATTATCA CCTCGATCGC GGCAACGGCA TCGCGGCGAT CCGCGACATC CGCGCCCGCT TCGGCGTCGC CATCCCGGCG ATCCTGATCA CCGCCGACCG CAGCCCCGGC GTCCGCGCCG CCGCCCGGCA GGAGGAGATC GCGGTGCTGA ACAAGCCAGT GAAAGCCGCC TCGCTCCGCG CGCTGCTCAA CCAGTGGCAC GCCCAGCAGA GCATCGCGGC GGCGGAGTAG
|
Protein sequence | MLHDWGVIAA ALAYIGFLFY VASFGDRLSQ GQRERAGGLI YPLSLAIYCT SWTFFGSVGF ASRTSIDFLA IYVGPILLIG VFTPLLRRVI RLAKSQNITS IADFIAARYG KSQKVAATVA IIAIIGSVPY IALQLKAVAS SLQTILGDDH NIAEIPIVGD MALIVAILMA LFAVLFGARQ ASATEHQHGL MLAIATESIV KLVAFIAAGV FVTFWMFSPA DLIERAMKMP EAVRVLESTP SATTFLTMTV LSFCAFLMLP RQFYVGVVEN TNDAEVSRAR WMFPLYLIAI NLFVIPIALA GLVKFPFGAV DSDMFVLALP IEANAPLLSF MVFIGGLSAA TAMVIVECVA LAVMVSNDLV MPLVLKRHGA PRNDQRSFGG FLLTVRRVAI FAILILAYLY YRALGNTQLA AIGLLSFAAI AQFAPAFFGG LIWRRATARG AIGGMMIGFA AWAYTLFIPS FMEGSTAGLV LLQQGPWGIE ALRPRALFGA ELPPLVHGVV WSLSLNLFAY IALSLLSRPS SIERLQAEVF VPDTLTPMTP AFRRWRTTVT VQDILGAVGQ YLGPERARDS FRSFAISRRL TLDPAAPADF ELLKHAEHLI ASSIGAASSR LVLSLLLRKR TVSAEAALKL LDDSHAALHF NREILQTALN HVRQGIAVFN PELQLICSNR QFGEILGLPP HIIQIGIPLI EILEFLSSAS AGSADTEAQT QMRLASYTTE GEPFLERLHD RHLVIEVRAN RMPDGGLVIT FSDVTPSFEA AEALERANAT LERRVRERTE ELTRLNSQLA LAKSTAEEAN ISKTRFLAAA SHDILQPLNA ARLYATSLVE RQNGGEDSRL VENIDESLEA IEEIIGALLD ISRLDAGAMT PSLTNFVIGD LMRSLEIEFA PTARAKGLQL IFVPCSLPVR SDRLMLRRLM QNLISNAIKY TPQGRVLVGC RRQGESLKIG IYDTGVGVPI LKRGEIFKEF HRLEQGARIA RGLGLGLSIV ERLARVLNHG ITLDANRGGG SCFAVTVPVA AVVNHTTAVT SATPLSRASM AGSLVVCIEN DPAILDGMKT LLTTWDASVI AVADPDAAIK AIESADRRIT GLLVDYHLDR GNGIAAIRDI RARFGVAIPA ILITADRSPG VRAAARQEEI AVLNKPVKAA SLRALLNQWH AQQSIAAAE
|
| |