| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4552 |
|---|
| Symbol | |
|---|
| ID | 3912369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5146119 |
|---|
| End bp | 5147552 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637886456 |
|---|
| Product | homospermidine synthase |
|---|
| Protein accession | YP_488146 |
|---|
| Protein GI | 86751650 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG5310] Homospermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.900238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCA CTTCGAAGAT TCACGCCAAG ATCACCGGCC CCATCGTGAT GATCGGCTTC
GGCTCGATCG GCAAAGGCAC CCTGCCGTTG ATCGAGCGGC ACTTCGAGTA CGACAAGCAC
CGCTTCGTCA TCATCGATCC GCACGAGGAC GGCGAACTGG CGAAGAAGCA CGGCGTGCGC
TTCATCAGCG AGGGCGTCAC CCGCGACAAT TACCGCGAGC TCCTGATTCC GCTGCTCACC
GAAGGCGGCG GCCAGGGCTT CTGCGTCAAC CTGTCGGTCG ATACCTGCTC GGTCGACATC
ATGACGATGT GCCAGGAGAT CGGCGCGCTA TATATCGACA CCGTGATCGA GCCCTGGCTC
GGCTTCTATT TCGACAAGAG CGCGGGCCCA GAGAAGCGCT CCAACTACGC GCTGCGCGAG
ACCCTGCTGG CCGCCAAGGC CAAGGCCGGC GAAGGCACCA CCACCGCGGT CTCCACCTGC
GGCGCCAACC CCGGCATGGT GTCGTGGTTC GTCAAGCAGG CGCTGATCGA CATCGCCCGC
GACACCGGCA CCGAGATCAA CGAACCGAAG AGCCGCGACG GCTGGGCGCA GCTCGCCCAC
AAGCTCGGTG TCAAGGGCAT CCATATCGCC GAGCGCGACA CCCAGCGCGC CAAGAATCCG
AAGCCGATGA ACGTGTTCGT CAACACCTGG TCGGTCGAAG GCTTCGTCTC CGAGGGCTTG
CAGCCGGCCG AACTCGGCTG GGGCACCCAC GAGACCTGGA TGCCGGACAA CGGCCGCACC
CACAGCGAAG GCTGCGGCGC CGCGATCTAC CTGCTGCAGC CCGGCGCCAA CACCCGCGTC
CGCACCTGGT GCCCGACGCC GGGCGCGCAA TACGGCTTCC TGGTCACCCA CAACGAGTCG
ATCTCGATCG CCGATTACTT CACGGTGCGC GACGGCCAGA ACGTGGTGTA CCGGCCGACC
TGCCACTATG CCTATCACCC GGCCAACGAC GCGGTGCTGT CGCTGCACGA AATGTTCGGC
GCCACCGGTA AGATGCAGCC CAAATGGCAC ATCCTGGACG AGAACGAGAT CGTCGACGGC
ATCGACGAGC TCGGCGTGCT GGTCTACGGC CACGCCAAGA ACGCCTATTG GTACGGCTCG
CAGCTGTCGA TCGAAGAGAC CCGCGAGATC TGCCCGTATC AGAACGCCAC CGGCATGCAG
GTGTCGTCGG CGGTGCTGGC CGGCATGGTG TGGGCGCTGG AGAATCCGGA AGCCGGCATC
GTCGAGGCCG ACGAGATGGA CTACAAGCGC TGCCTCGAAG TGCAGATGCC GTATCTCGGC
CCCGTCAAGG GCTACTACAC CGACTGGACC CCGCTGACCG ACCGCCCCGG CCTGTTCCCC
GAGGACATCG ACACCTCGGA CCCGTGGCAG TTCCGCAACG TGCTGGTGCG CTGA
|
|---|
| Protein sequence | MSSTSKIHAK ITGPIVMIGF GSIGKGTLPL IERHFEYDKH RFVIIDPHED GELAKKHGVR
FISEGVTRDN YRELLIPLLT EGGGQGFCVN LSVDTCSVDI MTMCQEIGAL YIDTVIEPWL
GFYFDKSAGP EKRSNYALRE TLLAAKAKAG EGTTTAVSTC GANPGMVSWF VKQALIDIAR
DTGTEINEPK SRDGWAQLAH KLGVKGIHIA ERDTQRAKNP KPMNVFVNTW SVEGFVSEGL
QPAELGWGTH ETWMPDNGRT HSEGCGAAIY LLQPGANTRV RTWCPTPGAQ YGFLVTHNES
ISIADYFTVR DGQNVVYRPT CHYAYHPAND AVLSLHEMFG ATGKMQPKWH ILDENEIVDG
IDELGVLVYG HAKNAYWYGS QLSIEETREI CPYQNATGMQ VSSAVLAGMV WALENPEAGI
VEADEMDYKR CLEVQMPYLG PVKGYYTDWT PLTDRPGLFP EDIDTSDPWQ FRNVLVR
|
|---|
| |