Gene RPB_4530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4530 
SymbolgltD 
ID3912347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5118767 
End bp5120221 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content67% 
IMG OID637886434 
Productglutamate synthase subunit beta 
Protein accessionYP_488124 
Protein GI86751628 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID[TIGR01317] glutamate synthases, NADH/NADPH, small subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAAGA TCACGGGATT TCTGGAAATC GAACGGCACG ATCGGGTCTA TGCGCCGGTC 
GCCGAGCGGG TGAAGAACTA CAACGAATTC GTCGTCCCGC TCAGCGACAA GGACCTCGGC
GACCAGGCCG CGCGCTGCAT GAATTGCGGC ATTCCGTATT GCCACGGCAC CGGCTCGGCG
CAGCCGGGCG CGCCGGGCTG CCCGGTCAAC AACCAGATCC CCGACTGGAA CGATCTGGTG
TACCAGGGCA ATTGGCAGGA GGCCTCGCGC AACCTGCACT CCACCAACAA CTTCCCGGAA
TTCACCGGCC GCATCTGCCC GGCGCCGTGC GAAGCCTCGT GCACGCTGAA CATCGACGAC
AACCCGGTCA CCATCAAGAC CATCGAATGC GCCATCGTCG ACCGCGCCTG GGAGAACGGC
TGGCTCGTGC CCGAGCTCGC CTCGGTCAAG ACCGGCCAGA GCGTCGCGGT GATCGGCGCC
GGCCCGGCGG GCCTCGCCTG CGCCCAGCAG TTGGCGCGCG CCGGCCATGA CGTCCACGTC
TATGAGAAGC TCGCCAAGGC CGGCGGCCTG CTGCGCTACG GCATTCCCGA CTTCAAGATG
GAGAAGCATC TGATCGACCG CCGCGTCGCG CAGATGGAAG CCGAAGGCGT CACCTTCCAC
TACAATGCAC CGGTCGGCGG CAATGCGGCC GGCGCGGTCG ATCCGGCCGA GCTGCTGAAG
CAGTACGACG CCGTGGCCTT GACCGGCGGC GCGGAATATC CGCGCGACCT GCCGATCCCG
GGCCGCGAGC TCTCCGGCAT CCATTTCGCG ATGGACTTCC TGACCCAGCA GAACCGCCGC
GTCTCCGGCG AAGCGGTGAA CGGCGCCGAC ATTCTGGCGA CCGGCAAGCA CGTCGTGGTG
ATCGGCGGCG GCGACACCGG CTCGGACTGC ATCGGCACCT CGATCCGTCA GGGCGCCACC
TCGGTGACCC AGATCGAGAT CATGGCGGCG CCGCCGGAGA AGGAAGACAA GGGCCTGACC
TGGCCGAACT GGCCGATGAA GATGCGCACC TCGTCGAGCC AGGCCGAAGG CGCGGTCCGC
GAATTCGCGG TGCTGACGCA GAGCTTCACG GGCGAGAACG GCGCGGTGAA GCAGCTCGAT
TGCGTCCGCG TCGACGCCAA ATTCCAGCCG ATCCCCGGCA CCGAATTCAC GCTGCAGGCC
GATCTGGTGC TGCTGGCGAT GGGCTTCGTC TCGCCGGTCA AGCAAGGCCT GCTCGAAAAA
CTCGGCGTCG CCCTCGACCC GCGCGGCAAT GTCAGCGCCG ACCTGTCGCA CTTCACCACC
TCGGTCGACA AAGTCTTCGC CGCCGGCGAC ATGCGCCGCG GCCAGTCGCT GGTCGTCTGG
GCGATCCGCG AAGGCCGCCT GTGCGCCCGG GCGATCGATC AGTTCCTGAT GGGAAGCACG
ACGCTGCCGA AGTAA
 
Protein sequence
MGKITGFLEI ERHDRVYAPV AERVKNYNEF VVPLSDKDLG DQAARCMNCG IPYCHGTGSA 
QPGAPGCPVN NQIPDWNDLV YQGNWQEASR NLHSTNNFPE FTGRICPAPC EASCTLNIDD
NPVTIKTIEC AIVDRAWENG WLVPELASVK TGQSVAVIGA GPAGLACAQQ LARAGHDVHV
YEKLAKAGGL LRYGIPDFKM EKHLIDRRVA QMEAEGVTFH YNAPVGGNAA GAVDPAELLK
QYDAVALTGG AEYPRDLPIP GRELSGIHFA MDFLTQQNRR VSGEAVNGAD ILATGKHVVV
IGGGDTGSDC IGTSIRQGAT SVTQIEIMAA PPEKEDKGLT WPNWPMKMRT SSSQAEGAVR
EFAVLTQSFT GENGAVKQLD CVRVDAKFQP IPGTEFTLQA DLVLLAMGFV SPVKQGLLEK
LGVALDPRGN VSADLSHFTT SVDKVFAAGD MRRGQSLVVW AIREGRLCAR AIDQFLMGST
TLPK