| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4343 |
|---|
| Symbol | bioD |
|---|
| ID | 3912156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4928127 |
|---|
| End bp | 4928768 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637886247 |
|---|
| Product | dithiobiotin synthetase |
|---|
| Protein accession | YP_487941 |
|---|
| Protein GI | 86751445 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0132] Dethiobiotin synthetase |
|---|
| TIGRFAM ID | [TIGR00347] dethiobiotin synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0906504 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGC CCATCGTCGT CACCGGCACC GACACCGGCA TCGGCAAGAC CGTGTTCGCC
GCTGCGCTCG CCGGCGCGCT CGATGCTTTC TACTGGAAGC CGGTGCAGGC CGGCATCGAG
GACGAGACCG ACCGGCAGGC GGTGCTGCGG CTGTCCGGCC TGCCTGACGC GCGCCTGTTG
CCGGAGGCGT ATCGGCTGAA CACGCCGGCC TCGCCACATC TGGCCGCGGA GATCGACGGC
GTGACGATCG ATGCCGAAGC GCTCGCGCTG CCGGAGATCG ACGGACCGCT GGTGGTCGAG
GGCGCCGGTG GGCTGCTGGT GCCGCTGACG CGCGCGATCA CTTACATCGA TATCTTCGCA
CGATGGCGCG CGCCGGTGGT GCTGTGCGCG CGCACCACGC TCGGCACCAT CAATCACACG
CTGTTGTCGA TCGAGGCGTT GCGTGCGCGC GCGATTCCGC TGCTCGGCGT TGCCTTCATC
GGCGACGAGA ATGTCGAATC CGAGCGCGTC ATCGTCCAGA TCGGCCGCGT GCCGCGATTG
GGCCGCCTTC CGCGCCTGGT CGAGGTGACC GCCGATGCGT TGCGCGCCGC GTTCGCGCAG
AACTTCAATA CCGACGACTT CCTGAAAGAC CCCGCTTCAT GA
|
|---|
| Protein sequence | MTKPIVVTGT DTGIGKTVFA AALAGALDAF YWKPVQAGIE DETDRQAVLR LSGLPDARLL
PEAYRLNTPA SPHLAAEIDG VTIDAEALAL PEIDGPLVVE GAGGLLVPLT RAITYIDIFA
RWRAPVVLCA RTTLGTINHT LLSIEALRAR AIPLLGVAFI GDENVESERV IVQIGRVPRL
GRLPRLVEVT ADALRAAFAQ NFNTDDFLKD PAS
|
|---|
| |