| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4257 |
|---|
| Symbol | |
|---|
| ID | 3912070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4842961 |
|---|
| End bp | 4843749 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637886162 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_487856 |
|---|
| Protein GI | 86751360 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0797349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCT CCTCGCCCAA AGTCGCCCTC GTCACCGGCG CCGCGCGCGG CATCGGGCTC
GCAGCGGTGC GATGCTTTCT CGCGGATGGT TGGCGCGTCG CGCTGCTCGA TATCGACGGC
GACGGCCTGG CCGCGACGAT CGCCCACCTG GCCGCGCCGG AGCGGACGCT GGCGCTGCCT
TGCGATGTTT CCGATGCCGG CGCGGTCGCG CGCGGCGTCG GCGCGATCGC GACCCGGTTC
GGCCGGCTCG ACGCGGTGGT CAACAATGCC GGCATCGCGG TGTTCAAGCC GCTGATGGAC
ACCACGCCGG AGGAATGGCA GCGGGTGCTC GCGGTCAATC TCACCGGGCC GTTCCTGGTG
ATCCAGGCGG CGGTGCCGCT GCTGCGCGAC AGCGGCGGCG GCGCGATCGT CAACATCACC
TCGATCTCGG CGCTACGCGC CTCGACGCTG CGGGTCGCCT ACGGCGCCAG CAAGGCCGGG
CTGGCGCATC TCACCAAGCA GTGCGCGGTC GAACTGGCCG CGCTCGGCAT CCGCGTCAAC
GGCGTCGCGC CCGGCCCGGT CGAGACCGCG ATGGCCAAGG CTGTCCACAC CCCTGAAATC
CGCGCCGACT ATCGCGACGC CATCCCGCTC GGCCGTTACG GGCTGGAAGA CGAACTGGCG
GAGGCGATCT ACTTCCTGTG CGGCGACCGC GCCAGCTACA TCACCGGGCA GATCCTCGCC
GTCGACGGCG GCTTCGACGC CGCCGGCATC GGCCTGCCGA CCCTGCGCGG CGAACGGCGG
AACGGGTAG
|
|---|
| Protein sequence | MTTSSPKVAL VTGAARGIGL AAVRCFLADG WRVALLDIDG DGLAATIAHL AAPERTLALP
CDVSDAGAVA RGVGAIATRF GRLDAVVNNA GIAVFKPLMD TTPEEWQRVL AVNLTGPFLV
IQAAVPLLRD SGGGAIVNIT SISALRASTL RVAYGASKAG LAHLTKQCAV ELAALGIRVN
GVAPGPVETA MAKAVHTPEI RADYRDAIPL GRYGLEDELA EAIYFLCGDR ASYITGQILA
VDGGFDAAGI GLPTLRGERR NG
|
|---|
| |