| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4002 |
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| Symbol | |
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| ID | 3911809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4568688 |
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| End bp | 4569626 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637885906 |
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| Product | chlorophyll synthesis pathway protein BchC |
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| Protein accession | YP_487606 |
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| Protein GI | 86751110 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.232331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000580255 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGACACCA TCGCGGTCGT ACTCAAGCAG CCACAACACG TCGAACTCAG TCGCCTGGCC
CTCACGGCCC CGACTGCGGA TGACGTTGTC GTTGATGTTG CCTGGAGCGG GGTCAGCACC
GGTACCGAGC GGCTGTTGTG GTCCGGCCGG ATGCCGGCGT TCCCCGGAAT GGGGTACCCG
CTGGTGCCGG GATATGAGTC GGTGGGCGAA GTGGTCGAGG CCGGATCGGC GACCGATCTG
CAGCCCGGCC AGATGGTCTT CGTACCCGGC GCAAAGTGTT TCGGCGAAGT CCGCGGTCTG
TTCGGAGCCT CCGCATCGCG GCTGGTCGTG CCGGCCAAAC GCGTCGTGCC GCTGGATCAG
CAACTCGGCG AGCGCGGTAT CCTGATAGCT CTTGCTGCCA CCGCCTATCA CGCGATTGCC
GCGCGCCATG CGACGCCGCC GGACTGCATC GTCGGTCACG GCGTGCTCGG CCGCCTGCTG
GCGCGGATTT CGATCGCGCT CGGCAATCCG CCGCCGGTGG TGTGGGAGAA GAACCCGATC
CGCAGCGGCG GCGCCGTTGG CTACGAAGTG ATCGACCCCG AGGCCGACCA GCGTCGCGAC
TACAAAAGCA TCTACGACGT CAGCGGCGAT CCGAAGCTGC TCGATTCTTT GATCTGCCGC
ATCGCGTCGA CCGGCGAGAT CGTGCTCGCT GGCTTCTACA GCGAGCCGCT GTCGTTCGCG
TTCCCGCCGG CCTTCATGCG CGAAGCCCGG ATCCGGATCG CAGCGGAATG GCAACCGGCG
GACATCGGCG CCACCAAGGC GCTGATCGAT TCCGGCAAGC TCTCGCTCGA CGGACTGATT
ACGCATCATC AGGAAGCGGC TTCCGCACCT GATGCCTATC GCATCGCCTT CGAAGATCCC
GCCTGCCTCA AGATGGTTCT GAACTGGAGA TTGAGCTGA
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| Protein sequence | MDTIAVVLKQ PQHVELSRLA LTAPTADDVV VDVAWSGVST GTERLLWSGR MPAFPGMGYP
LVPGYESVGE VVEAGSATDL QPGQMVFVPG AKCFGEVRGL FGASASRLVV PAKRVVPLDQ
QLGERGILIA LAATAYHAIA ARHATPPDCI VGHGVLGRLL ARISIALGNP PPVVWEKNPI
RSGGAVGYEV IDPEADQRRD YKSIYDVSGD PKLLDSLICR IASTGEIVLA GFYSEPLSFA
FPPAFMREAR IRIAAEWQPA DIGATKALID SGKLSLDGLI THHQEAASAP DAYRIAFEDP
ACLKMVLNWR LS
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