Gene RPB_3940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3940 
Symbol 
ID3911747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4496360 
End bp4497058 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content63% 
IMG OID637885844 
ProductHly-III related proteins 
Protein accessionYP_487544 
Protein GI86751048 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0178087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATCT TTCGGATCAA GCAAATCGAT TCGCATTCCA GGATCGACTC CAGGGGATCG 
GTTCACTGGA ATTACGATCG CGCCGAGCTG ATTGCGGATG GCGTGGTCCA CGTGCTGGGC
CTCGTCGCCG GCCTGATCGC CGTGACCGCG CTGATCACGC TGACCGGAGT GTTCGCGAAT
ACGTCCAAAT TCGTCTCGGT CACGGTCTAT GCCGCCGGCC TGCTGGCGAT GCTGGGTTTG
TCGGCGGCGT ATAATCTGTG GCCGGTGTCG CCGCGCAAAT GGGTGCTGCG GCGGTTCGAC
CATTCGGCGA TCTACATCCT GATCGCCGCA ACCTACACAC CGATCATCAG CCAGATCAAG
GACCAGATGT TCGCGCTGGC GCTGCTCGCC GGCGTCTGGA GCGTCGCGCT GGTCGGCATC
CTGCTGAAGC TGTTCAAGCC CGGCAAGTTC GACAAGCTCT CGGTCGGGCT GTATCTGGCG
ATGGGCTGGA GCGGGCTGAT CGCCTATGAT CATGTGGTCG AAACGCTGCC CAATCTGGCG
ATGTGGTTCC TCGCCGCCGG CGGCGCGCTG TACACGCTCG GCGTGATCTT CCACGCCTGG
CGCCGGCTGC GATTCCAGAA CGCGATCTGG CACGCTTTCG TGCTGGTCGC CGCCGCCTGC
CACTATGTGG CGGTGATGGA CCTGGTGCTG GCCGCCTAG
 
Protein sequence
MTIFRIKQID SHSRIDSRGS VHWNYDRAEL IADGVVHVLG LVAGLIAVTA LITLTGVFAN 
TSKFVSVTVY AAGLLAMLGL SAAYNLWPVS PRKWVLRRFD HSAIYILIAA TYTPIISQIK
DQMFALALLA GVWSVALVGI LLKLFKPGKF DKLSVGLYLA MGWSGLIAYD HVVETLPNLA
MWFLAAGGAL YTLGVIFHAW RRLRFQNAIW HAFVLVAAAC HYVAVMDLVL AA