Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3940 |
Symbol | |
ID | 3911747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4496360 |
End bp | 4497058 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637885844 |
Product | Hly-III related proteins |
Protein accession | YP_487544 |
Protein GI | 86751048 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0178087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATCT TTCGGATCAA GCAAATCGAT TCGCATTCCA GGATCGACTC CAGGGGATCG GTTCACTGGA ATTACGATCG CGCCGAGCTG ATTGCGGATG GCGTGGTCCA CGTGCTGGGC CTCGTCGCCG GCCTGATCGC CGTGACCGCG CTGATCACGC TGACCGGAGT GTTCGCGAAT ACGTCCAAAT TCGTCTCGGT CACGGTCTAT GCCGCCGGCC TGCTGGCGAT GCTGGGTTTG TCGGCGGCGT ATAATCTGTG GCCGGTGTCG CCGCGCAAAT GGGTGCTGCG GCGGTTCGAC CATTCGGCGA TCTACATCCT GATCGCCGCA ACCTACACAC CGATCATCAG CCAGATCAAG GACCAGATGT TCGCGCTGGC GCTGCTCGCC GGCGTCTGGA GCGTCGCGCT GGTCGGCATC CTGCTGAAGC TGTTCAAGCC CGGCAAGTTC GACAAGCTCT CGGTCGGGCT GTATCTGGCG ATGGGCTGGA GCGGGCTGAT CGCCTATGAT CATGTGGTCG AAACGCTGCC CAATCTGGCG ATGTGGTTCC TCGCCGCCGG CGGCGCGCTG TACACGCTCG GCGTGATCTT CCACGCCTGG CGCCGGCTGC GATTCCAGAA CGCGATCTGG CACGCTTTCG TGCTGGTCGC CGCCGCCTGC CACTATGTGG CGGTGATGGA CCTGGTGCTG GCCGCCTAG
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Protein sequence | MTIFRIKQID SHSRIDSRGS VHWNYDRAEL IADGVVHVLG LVAGLIAVTA LITLTGVFAN TSKFVSVTVY AAGLLAMLGL SAAYNLWPVS PRKWVLRRFD HSAIYILIAA TYTPIISQIK DQMFALALLA GVWSVALVGI LLKLFKPGKF DKLSVGLYLA MGWSGLIAYD HVVETLPNLA MWFLAAGGAL YTLGVIFHAW RRLRFQNAIW HAFVLVAAAC HYVAVMDLVL AA
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