| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3650 |
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| Symbol | |
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| ID | 3911452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4189890 |
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| End bp | 4191083 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885552 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487256 |
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| Protein GI | 86750760 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.521212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTTG CGACAGAAAC CCCGCCCGCT GCGCGGTCGG CCCCTGAAAA GCCGCGCCCC
CGTCCGGTGC GGATGATCCG ATGGTTCATC ATCATCGGGT TGCTGCTGGC GATTCTGGTC
GGCGGGCTGG TCGGCTTCAA CGCCTTCCGC AGCCACATGA TCGCGCAGTT CTTCGCCAAC
AACAAACCGC CGCCGATCAA CGTCTCGATC GCCGAGGCGA AGTCGGAGGT GGTGCCGAAC
CTGCTGACCG CGGTCGGCGA TCTCGCCGCC GTGCATCAGG TCAACGTCAC CTCCGACGTC
AACGGACGCA TCACCGACAT TCTGTTCACG CCGGGTGCCG AGGTCAAAGC GGGCGCAAAA
CTGCTGCAGC TCTACGACGC GCCGGAGCAG GCCGACCTCG CCAATTACCG GGCGCAGGTC
AAGGTCGCCG AGCTGTCGCT CGACCGCGCC AAGCAGCTCG CCGCACGGCA GTTCGGACCG
CAGGCGACGG TCGATCAGGC CCAGGCGTCG TTCGACCAGG CCAATGCCGG CATCGCGCGG
ACGGAAGCGG TGATTTCGCA AAAGCTGGTG CGCGCGCCGT TCGACGGCGT GCTCGGCGTC
CGCCGCGTCG AGGTCGGTCA ATATCTCACG GCCGGCACCC AGATCGTGAC GCTGACCGAC
CTGTCGCGGG TCTATACGAA CTTCACCGTG ACCGAGAAGG ACAGCGGCAC CTTGAAGGTC
GGGCAAGCGG TGCGCGTCAC GGTCGACGCC TATCCGGGCC GCGTGTTCGA AGGCAAGATC
ACCACGATCG AGCCGCAGAT CAGCGCCGAG ACCCGCAACA TCCGGGTGCA GGGCACGCTG
GATAATCCCG AGCACATCCT GAAGCCCGGC ATGTTCGCGA CCACCACGGT GGTGCTGCCG
GACAAGCCGG CGGTGATCAC CGTGCCGGAA ACCGCCGTCG ACTATACGCT GTACGGCGAC
TCCGTGTTCC TGATCAAGGA AGAGAAGGCC GACGACGGCA AGACCAGCCT GACCGCGGTG
CGGACCTTCG TGCGCACCGG GGAGCGGATC CACGGCCGCG CCGTGATCCA GAGCGGTCTG
AAAGCCGGCG ACCGCGTCGT CGCGGTCGGC CAGCTCAAGC TGCAATCCGG TGCCGCGGTG
GCGATCTCCA AGGACCCGCC GCCGCCGATT CCGGCCACGC CGCCGCGCTA CTGA
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| Protein sequence | MTLATETPPA ARSAPEKPRP RPVRMIRWFI IIGLLLAILV GGLVGFNAFR SHMIAQFFAN
NKPPPINVSI AEAKSEVVPN LLTAVGDLAA VHQVNVTSDV NGRITDILFT PGAEVKAGAK
LLQLYDAPEQ ADLANYRAQV KVAELSLDRA KQLAARQFGP QATVDQAQAS FDQANAGIAR
TEAVISQKLV RAPFDGVLGV RRVEVGQYLT AGTQIVTLTD LSRVYTNFTV TEKDSGTLKV
GQAVRVTVDA YPGRVFEGKI TTIEPQISAE TRNIRVQGTL DNPEHILKPG MFATTTVVLP
DKPAVITVPE TAVDYTLYGD SVFLIKEEKA DDGKTSLTAV RTFVRTGERI HGRAVIQSGL
KAGDRVVAVG QLKLQSGAAV AISKDPPPPI PATPPRY
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