| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3340 |
|---|
| Symbol | |
|---|
| ID | 3911142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3821164 |
|---|
| End bp | 3821928 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637885243 |
|---|
| Product | regulatory protein GntR, HTH:GntR-like |
|---|
| Protein accession | YP_486947 |
|---|
| Protein GI | 86750451 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0714467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCC CGCTCAATTC CGAGACCACC CACACGGTCC GCAGGACGCT CGAATTCGTC
CAGCACCATC GGCTGGCGAA GGGCGACCGG CTGCCGTCGG AGCGGGAATT GTCGGAGCGG
TTCGGGGTGG CGCGCAGTTC GGTGCGCGAG GCGCTGGCGG TGCTGGACGC GATGCGGATC
ACCGAGCGCA AGCCGAAATC GGGCATCTTC CTGCGCAACG CGGTCGAGGA CGGCGGGCTC
GATGCGCTGG TGCTGCAGGC CGATCTCGGG CTGGCGTTCG ATCCGCAGGT GACGCGCGAC
GTCACCGAGG CGCGGATCAT CTGCGAGGAG CAGGCGCTGC GGATTGCCTG CCGCAGGCGC
ACTGACGCTG ATCTGGCGAA GCTGCACCGA TTGCTCGACG GCTATGCCGG GCTGGTCGAC
GCCGACCGCA ATCCCGCCGA TGCCGACGTC GATTTTCACC TCGCGCTCGT CGCCGCGAGT
CAGAACCGGA TTCTGGTGCG CACGCTGACG CCGCTGATGC TGATGAGCAC GAATTGGCGG
CGGCGCTATT TCGATTCCGC CGCGATCCGC CGTCGTTCGC TCGACGATCA CCGCGCCTTC
GTGGCCGCGA TCGAAGCGCG CGACGAAGCC GCCACCTCGG CGCTGGTGCA GCGCCACGTG
CAGACCGCCG CGGCCGACGT GCGCGCTCTG GCGGAGCAGG GCGGCGCGAC CGCGACCGAC
ACGCCATCCA AATCAGACAC GCGCGCATCC GACGCGCCGA CATAA
|
|---|
| Protein sequence | MATPLNSETT HTVRRTLEFV QHHRLAKGDR LPSERELSER FGVARSSVRE ALAVLDAMRI
TERKPKSGIF LRNAVEDGGL DALVLQADLG LAFDPQVTRD VTEARIICEE QALRIACRRR
TDADLAKLHR LLDGYAGLVD ADRNPADADV DFHLALVAAS QNRILVRTLT PLMLMSTNWR
RRYFDSAAIR RRSLDDHRAF VAAIEARDEA ATSALVQRHV QTAAADVRAL AEQGGATATD
TPSKSDTRAS DAPT
|
|---|
| |