| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3272 |
|---|
| Symbol | |
|---|
| ID | 3911073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3742995 |
|---|
| End bp | 3745247 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885174 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_486879 |
|---|
| Protein GI | 86750383 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.46801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.424622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTCT ATCGCGATAC AATTGTTCTT GCGGCTCTCA CCGCCGCTTC GATGTGCGTG
CCGGAGGCGA TGGCGCAGCC GTCTTCGCAG GCGGAGTCGG TTGCGCTTCC GGCCGTGACG
GTGAGCCCGG CACAGCGCGC TTCGAGCCGG TCCGCTCCGC GTCGTCGCGC AGCAAAGCCG
GTACCGGCGC CGAGGACCGC GCCGGTCGCG CCCCGCGCGG TCACCAGCGT CAGCAACACG
TCGGATCGCT ATCTCGACCG GCGTTCGACC GCAGCGACGA AGACCGACAC GCCCGTGCTG
GAGACGCCGC AGTCGATCTC GACGATCACA CGCCGGCAGA TGGACGATCA GAACGCCCAG
ACGGTCGGCA ATGCCCTTCG CTATACGGCG GGTGTCCTCT CTGATGCCGA TTCCAATGCG
CGCTACGACA GCATCTTCAT TCGCGGCTTC GGCGCGTTCG GCACCGCGAC CAACTACGTC
AGTTTCCTCG ACGGTCTGAA GCTGCCGCGC GGCCAGGCCT TCGCCAACAC GTCGATCGAC
CCGTTCCTGC TCGACCGCGT CGAGGTGTTG AAGGGGCCCT CGGCGGTTCT CTACGGCCAG
ACCAGCCCCG GCGGCCTCGT CAACCAGGTC AGCCGGCTGC CCAGCGCCGT GCCCTACAAC
GAAGTCAGGA TCGAGGGCGG CACCTACGGC CGCATCCAGT CGGGGGTCAC CAGCCAGGGC
GCCCTGGATA AAGACGGGCA CTGGCTCTAC AGCCTGAGCG CCATCGGCCG CTCGTCCGGC
ACGCGCTACG ACGGCGTCGA CGAACAGCGC TACGCCGTCG CGCCCGCCGT CACCTGGACG
CCGGACGCCG ACACCAGCTT GACGGTGCAG AGCTACTATC AGCGCGATCC GAAGGGCGGC
TATTTCAATT CGCTGTATGC CAGATCGCTG GCGCCGGCGC AGTACCAGTC GTTCCTGAAC
TCCAAGCTGA ATGTCGGTGA CCCGAGCTTC GATGCGTTCC AGCGCGAGCA ATACGGCATC
GGTTATCAGT TCGACAAACG CCTCAACAGC GTCGTCAGCG TTCGGTCGAG CCTGCGCTAT
TCGCACGTCG ATATCGATAT GCAGTCGCTG CAGATGAACG CGCCGCTCAC GGCGACCGGC
CAGTTGCCGC GCTGGGCGGT GCGCTCCATC GAGAATGTCG GCGGATTGTC GACCGATAAC
CGGGTGCAGT TCGACCTCTC CACCGGCGCA CTTCAGCACA AGATCATCAC CGGCGCCGAC
TATCAGCAAT CCCGGAGCGA CTGGGTCTAT CAACTCGGCG CGGCGACGTC CCTGAACGTG
ATCAATCCGG TCTACGGCCA GACGGTCGGA ACGCTCACGT CGCTGATCAA CAGCGGGCAG
GACCTGTCCC AGACCGGTCT GTACGCGCAG GATCAGATCA GCCTCGGTCA ATGGCGCGCG
ACCCTCGGCG CCCGCCACGA CTGGACCGAG CAGAGCACGG ACAACCGCCT CGCAGGCTCC
GGCACCAGCC AATCCGCCGA CAAGACGACG TACCGCGCCG GTCTGCTGTA TCTCTTCGAC
AATGGTGTCG CGCCCTATGT CAGCTACTCG ACCTCGTTCG AGCCGGTGGC CGGCGTCGGT
GTCGACGGTT CGCCGTTCAT CCCGACGACG GCGGAGCAAT ATGAAGGTGG CATCAAGTAT
CAGCCGAATG CCCTGCCGAT CCTGCTGACG GCATCGGTCT TCGATATCCG GCAGCAGAAC
GTGCTGACGC CGTCCGCCGT TGCGGGCTTT AACGTCCAGC AGGGTGAAGT TCGGTCGACC
GGGGTCGAAT TGGAGGCGCG CGGCAACGTC ACAGACGGCC TCGAATTGAT CGGCGCCGTG
ACGTTCCTCG ACACGCGCGT CACGCAGTCG ACGACCACGT CGATCATCGG CAATCGGCCG
CAAGCGGTGC CCGACTTCTT CGGCTCTGTC TGGGCAAATT ACACTTTCCG GTCCGGTCCC
GTGGGCGGAT TGTCGGTCGG TGGCGGCATC CGGCATGTCG GCGCGAGTTA CGGCGACGAC
GCCAACACGC TGCAGACGTC GGCCTACACC CTCGTGGATG CGGCGCTGAA GTATGAGCTC
GAGTATCTCT CGCCCCGCCT GAAAGGCACG GCCTTGACGC TCAACGTCAA CAATCTGTTC
GACAAGGAGT ACTATTCGAG CTGTTCGTCG ACTTACTACT GCCAGTTCGG CAACCGCCGA
ACGATCCTGG CCGGGCTCCG GTATCGATGG TGA
|
|---|
| Protein sequence | MGLYRDTIVL AALTAASMCV PEAMAQPSSQ AESVALPAVT VSPAQRASSR SAPRRRAAKP
VPAPRTAPVA PRAVTSVSNT SDRYLDRRST AATKTDTPVL ETPQSISTIT RRQMDDQNAQ
TVGNALRYTA GVLSDADSNA RYDSIFIRGF GAFGTATNYV SFLDGLKLPR GQAFANTSID
PFLLDRVEVL KGPSAVLYGQ TSPGGLVNQV SRLPSAVPYN EVRIEGGTYG RIQSGVTSQG
ALDKDGHWLY SLSAIGRSSG TRYDGVDEQR YAVAPAVTWT PDADTSLTVQ SYYQRDPKGG
YFNSLYARSL APAQYQSFLN SKLNVGDPSF DAFQREQYGI GYQFDKRLNS VVSVRSSLRY
SHVDIDMQSL QMNAPLTATG QLPRWAVRSI ENVGGLSTDN RVQFDLSTGA LQHKIITGAD
YQQSRSDWVY QLGAATSLNV INPVYGQTVG TLTSLINSGQ DLSQTGLYAQ DQISLGQWRA
TLGARHDWTE QSTDNRLAGS GTSQSADKTT YRAGLLYLFD NGVAPYVSYS TSFEPVAGVG
VDGSPFIPTT AEQYEGGIKY QPNALPILLT ASVFDIRQQN VLTPSAVAGF NVQQGEVRST
GVELEARGNV TDGLELIGAV TFLDTRVTQS TTTSIIGNRP QAVPDFFGSV WANYTFRSGP
VGGLSVGGGI RHVGASYGDD ANTLQTSAYT LVDAALKYEL EYLSPRLKGT ALTLNVNNLF
DKEYYSSCSS TYYCQFGNRR TILAGLRYRW
|
|---|
| |