| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3009 |
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| Symbol | |
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| ID | 3910808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3429731 |
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| End bp | 3432913 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884915 |
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| Product | ribonuclease |
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| Protein accession | YP_486622 |
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| Protein GI | 86750126 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00611074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.333184 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAACA AGATGCTGAT CGACGCCACC CACCCGGAAG AGACCCGGGT GGTCGTGGTC
CGCGGCAACC GCGTCGAAGA GTTTGATTTC GAGACCGCAC AGCGCAAACA ACTGCGTGGC
AACATCTACC TCGCCAAAGT GACACGGGTC GAACCGTCGT TGCAGGCCGC CTTCATCGAA
TACGGCGGCA ACCGGCACGG ATTCCTCGCT TTCAGCGAAA TCCATCCCGA CTACTACCAG
ATCCCCGTCG CCGATCGTCA GGCCCTGATC GAGGCCGACG AGCGGGCGCA TCGCGAGGCC
GAGGAAGAAA ACGAGCAGCG CTCGACCCGC CGCCGGTCGA GGCACCGCAG CCATCGCCGC
CGCGGCAGTG GCGAACGGGT CACCAGCGAG ATCGTCGAGG CTTCCGCCGG CGCCGTGGCC
GAGCCGCACG ATCAATTCAG CGATCTTGCC GACAGCGATC CTGCCGACAA TGGACACGCG
CACGCCGACC ACGAACGGCC GATGCACGAC ATTCCTGCGG ATGACGCCGG CGATGTGACG
CAGGCCTCGG CGGACAATGC CGAAGGCCAC GACGGTCATC ACGACGCCGA GCGCCAGGGA
TACCATGCGG CTTCGGCTGA GTATCTCGAC GAGACGGCGG TCGCGCCGAG CATCGCCGAC
GGCGAGCAGC CCACCCTGCC CGACTTCGGC GCCACGCCGC ACGCCCAGAC CCTCTCCCAG
GACGTTGAAG AGAATAGCGG TCACGCCGAA GATGCGCCGT TCCCGATCGC CGAAGGCGCT
GAGCAAGAAC ATGGCGATGA CGCCGGCGAC GAATTGAACG ACGCGGATGG CGACGCGGAC
CTGGAGGACG CTGCCCGGTC CGACACCGAA GCAGACGACG AGGATGAAGA CGAGGACGAG
GACGACGAGG CCGAGGAAGA CATCGTCGAA TCCGTCGGCG GCGACGATGT GCTGGAAGAA
GTTCCCGAAC GCGCCTTCCG GCCGCGCCGG CAGTACAAAA TCCAGGAAGT CATCAAGCGC
CGTCAGGTGA TGCTGGTGCA GGTGGTCAAG GAAGAGCGCG GCAACAAGGG CGCGGCGCTG
ACGACCTACC TGTCGCTCGC CGGCCGTTAC GCCGTTCTGA TGCCGAACAC CGCGCGCGGC
GGCGGCATCA GCCGCAAGAT CACGTCGGCG CAGGATCGCT CCCGCCTCAA GGAAGTGGTT
CAGGATCTCG ACGTGCCGGA AGGCATGGGC ATCATCCTGC GCACCGCCGG CGCCTCGCGC
ACCAAGCCGG AGATCAAGCG CGACTTCGAA TATCTGATCC GGATGTGGGA GACGGTCCGC
GACGTCACGC TGAAGTCGCA GGCGCCGACG CTCGTCTACG AGGAAGGCTC GCTGATCAAG
CGCTCGCTAC GCGATCTCTA CAACAAGGAG ATCGACGAAA TCCAGGTCGC GGGCGAAGCC
GGCTACCAGG AAGCGCGCGA CTTCATGCAC ATGCTGATGC CGTCCAACGT TCGCGCGGTG
AAGCTGTATC GCGACGGGCA ACCTCTGTTC TCGCGAATGG GAGTCGAGAG CCAGCTCGAC
GCGATGTTCT CGCCGACCGT GCAGTTGCGG TCCGGCGGCT ACATCGTGAT CAACCAGACC
GAGGCGTTGG TCTCGATCGA CGTCAACTCC GGTCGCTCGA CCCGCGAGCA CCATATCGAG
GACACCGCGC TCAAGACCAA CCTCGAGGCC TCGGAGGAAG TCGCGCGGCA GCTGCGCCTG
CGCGACCTCG CCGGCCTGAT CGTCATCGAC TTCATCGACA TGGACGAGAA GCGCAACAAT
CGCGCTGTCG AGCGCAAGCT CAGCGATTGC CTGCGGCAGG ATCGCGCCCG CATCCAGGTC
GGTCGGATCT CGCATTTCGG CCTGCTCGAA ATGTCGCGCC AGCGCATCCG CGCCAGCGTG
CTGGAAAGCT CGACCGAGCC CTGCCCGCAT TGCGGCGGCT CCGGCCACGT GCGGTCGGTC
TCGTCGGTGG CGCTGCAATT GCTGCGCGGT CTCGAAGAGA TCCTGATGAA GGGCGCGACC
CATAATCTGA TCGTGCGCAC CCGCGCCGAT GTCGCCCTCT ATGTCCTCAA TCAGAAGCGC
GGGCACCTGC GCGATCTCGA AACCGGCTTC AGGGTGACGC TGTCGGTCGT GTCGGATCCG
ACCGTGACCG GACAGCAGTC GTTCGTGATC GATCGCGGCG AGCAGGTTCA CACGTTGGAA
TCCGCCAAGG CGCTGCTCGC GGCGCAGGTC GCGGCCTATC CGGTCCAGGC CGAAGAGCCT
TTTGAGGACG ACGAGGGTTA CGAGTTCGAG GCCGAGATCG AAACCGACGA GACCGTCGGC
CTGGCCGATG AGCACGCCAG CGACAGTGGC GAAGGCGAAG GAGAAGGCGA CGCCCGCAAG
CGCAAGCGCC GCCGCCGCCG CCGCTCGCGC ACCGGCGAGG CCCGTGAAGC GGGCGCGCCG
CGCGAGGACG GCGATGCTGC GCTCGTTCCC GAGGTTTTGG AAGCCGTTTC CGAAGACGAC
AGCGAAGACG GCGACGACAG CGCCGACGGC GCTGAAGGGG ACGGTGACGC GCGGGCCGAT
CAGGCGAATG GCGAGCGTCG TCCGCGTCGC CGTGGCCGCC GCGGCGGTCG CCGCCGGCGT
GGCGCTGCCG AGGGAGGCCT CGAAGAAGGC GCCTCCGGCT CGATCGTCGA CGACATCGGA
GAGTTGGAGA CCTCGGAGGC CGCCGAGGCG GCCGCCGATA TGGACGGCGG TGGATCGGAC
GGACGCTTGC TCGGCAAGCG GCACGAGCCG GACATCGATG ACGATGAGAT GGCAGAGCCG
GTCACGGCTA CGCTTTCCCC CGTTGCCAGC GAGCCGGAAG AACGCGCAGA GCCGGTGCAG
GCGCAGCAGA GCGAGCCGGT CGCCTCGGCC CCCGCCCAAG ACGCCGCTCC GTCGGCGCAG
GCCCAGGACG ACGCCGCAGC CGAGCGCGCC GCCGCACGCC GCCGGTCGAC GGTGCGCGAA
AAGGTGAATT TCGGGTCCTC GGAACCGAAG GTGGAGGCGT CGACGCCGCT GGCGATCGAG
CCGGCAGCGC AGCAGCCCGA ACCGGCACCG GCCATTCCGG AGCCACAGGC CGCTGCCGAG
CCGGCTCCCG AACCTTCCCG TCGCGCCGGA TGGTGGTCGC GCCGCTTCGG CGGCGGCAAC
TGA
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| Protein sequence | MPNKMLIDAT HPEETRVVVV RGNRVEEFDF ETAQRKQLRG NIYLAKVTRV EPSLQAAFIE
YGGNRHGFLA FSEIHPDYYQ IPVADRQALI EADERAHREA EEENEQRSTR RRSRHRSHRR
RGSGERVTSE IVEASAGAVA EPHDQFSDLA DSDPADNGHA HADHERPMHD IPADDAGDVT
QASADNAEGH DGHHDAERQG YHAASAEYLD ETAVAPSIAD GEQPTLPDFG ATPHAQTLSQ
DVEENSGHAE DAPFPIAEGA EQEHGDDAGD ELNDADGDAD LEDAARSDTE ADDEDEDEDE
DDEAEEDIVE SVGGDDVLEE VPERAFRPRR QYKIQEVIKR RQVMLVQVVK EERGNKGAAL
TTYLSLAGRY AVLMPNTARG GGISRKITSA QDRSRLKEVV QDLDVPEGMG IILRTAGASR
TKPEIKRDFE YLIRMWETVR DVTLKSQAPT LVYEEGSLIK RSLRDLYNKE IDEIQVAGEA
GYQEARDFMH MLMPSNVRAV KLYRDGQPLF SRMGVESQLD AMFSPTVQLR SGGYIVINQT
EALVSIDVNS GRSTREHHIE DTALKTNLEA SEEVARQLRL RDLAGLIVID FIDMDEKRNN
RAVERKLSDC LRQDRARIQV GRISHFGLLE MSRQRIRASV LESSTEPCPH CGGSGHVRSV
SSVALQLLRG LEEILMKGAT HNLIVRTRAD VALYVLNQKR GHLRDLETGF RVTLSVVSDP
TVTGQQSFVI DRGEQVHTLE SAKALLAAQV AAYPVQAEEP FEDDEGYEFE AEIETDETVG
LADEHASDSG EGEGEGDARK RKRRRRRRSR TGEAREAGAP REDGDAALVP EVLEAVSEDD
SEDGDDSADG AEGDGDARAD QANGERRPRR RGRRGGRRRR GAAEGGLEEG ASGSIVDDIG
ELETSEAAEA AADMDGGGSD GRLLGKRHEP DIDDDEMAEP VTATLSPVAS EPEERAEPVQ
AQQSEPVASA PAQDAAPSAQ AQDDAAAERA AARRRSTVRE KVNFGSSEPK VEASTPLAIE
PAAQQPEPAP AIPEPQAAAE PAPEPSRRAG WWSRRFGGGN
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