| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2894 |
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| Symbol | |
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| ID | 3910688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3295455 |
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| End bp | 3296837 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637884795 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_486507 |
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| Protein GI | 86750011 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.386257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCGGT TATCCGGTCT TATGACTGCC GGCGTCGTTC TGGCGTGTTT GGGTCCGGCC
CCTGTGCTGG CCGAAACGAT CGAGGCTGCC TTGATCCGCG CCTACCAGAC CAACCCCCAG
CTCAATGCCC AACGCGCCTC GGTGCGCTCG ACCGACGAAT CGGTTCCGCA GGCGCTGTCG
GGCTATCGTC CCAAGGTTTC GGTGACGGCG AGCGGCGGCT ATCAATACAC CGACGTCGCC
GGCGTCCAAC TCGGCAACCG GTATCAGCTC AACGGCACGC AGGTTCCGCG GTCGGTCGGC
ATCACCGCGA CGCAGACGCT GTTCAACGGC AACCAGACCG CCAACCGCAC TCGCGCGGCC
GAGGGCCAGG TCTCATCGGC GCGCGAGGGA CTTCGCGTGC TGGAACAATC CGTGCTGCTG
TCGGCCGCGA CCATCTACAT GGACTATCTG CGCGACGCGG CGACGGTCGA GGTGCAGAAG
TCCAACGTCC GCGTGCTCGA CCAGACGCTG AAGCAGACCA ACGACCGCTT CAATGTCGGC
GAGGTCACCC GTACCGACGT CGCGCAATCG CAGGCGCAGC TTGCGGCCGG TAACACCCAG
TTGCTCACCG CCGAATCCAA TCTCACGACC ACCCGCGCGA ATTACCGCCG GATCATCGGC
AGCGAGCCGA CCGGGCTGGC GCCGGGATCG CCCGTCGATC GCTTCCTGCC GGCAACGCTG
GCGAAGGCGG TCGAACTCGG CATGGTCGAG AATCCGAACG TCACCTCGGC GATGTACGGG
GTCGACGTCA ATTATCTCAA CGTGAAGATC AACGAAGGCG CGCTGTTCCC GACCGTCACT
CTGCAGGCGA ACGCGCAGCA ATCATGGGAA TCGTCGATCA CGACGAGCAA GCAGTTCGTC
GCCGGGGCGA CCGCCCAAGT GTCGATTCCG ATCTATCAGG GTGGCTCCGA ATATTCGCTG
ATCAGGCAAT CGAAGGAATC GCTGGCGCAG CAGCGTCTCT ATCTCGAGCA GGTGCGCGAC
CAGACCCGCG CGACCATCGT GCAGGCCTGG GGCCAGCTCG AAGCGGGCCG GGCCCAGGTC
GCCTCGGCAC AGTCCCAGGT CAAGGCATCG GAGATCGCGC TTAACGGCGT GCGCGAAGAG
GCGCGGGCCG GCCAGCGCAC CACGCTCGAC GTCCTCAACG CGCAGCAGGC GCTGGTCAAT
GCGCGGGTGT CGCTGGTGAC GGCGCAGCAT GATCGCGTGG TGGCGTCGTA TTCGGTGCTG
AGTGCGATCG GGCGGCTGGC GCCGCAGGTG CTCGGCCTGA AGACCGATGT CTACGATCCG
AGTGTGCACT ACCATCAGGT CCGCGATTCC TGGGTCGGCG TTCGGACGCC CGACGGTCGC
TGA
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| Protein sequence | MKRLSGLMTA GVVLACLGPA PVLAETIEAA LIRAYQTNPQ LNAQRASVRS TDESVPQALS
GYRPKVSVTA SGGYQYTDVA GVQLGNRYQL NGTQVPRSVG ITATQTLFNG NQTANRTRAA
EGQVSSAREG LRVLEQSVLL SAATIYMDYL RDAATVEVQK SNVRVLDQTL KQTNDRFNVG
EVTRTDVAQS QAQLAAGNTQ LLTAESNLTT TRANYRRIIG SEPTGLAPGS PVDRFLPATL
AKAVELGMVE NPNVTSAMYG VDVNYLNVKI NEGALFPTVT LQANAQQSWE SSITTSKQFV
AGATAQVSIP IYQGGSEYSL IRQSKESLAQ QRLYLEQVRD QTRATIVQAW GQLEAGRAQV
ASAQSQVKAS EIALNGVREE ARAGQRTTLD VLNAQQALVN ARVSLVTAQH DRVVASYSVL
SAIGRLAPQV LGLKTDVYDP SVHYHQVRDS WVGVRTPDGR
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