| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2604 |
|---|
| Symbol | smpB |
|---|
| ID | 3910396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2988529 |
|---|
| End bp | 2989002 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637884504 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_486218 |
|---|
| Protein GI | 86749722 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0711734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA AGAACGAACG CGCGATCAAG GTGGTCGCGG AGAACCGCAA GGCGCGGTTC
AACTACGCGA TCGAGGACAC CGTCGAGGCC GGCATTTCGC TGACCGGCAC CGAGGTGAAA
TCGGTCCGCG GCGGCAAGGC GACGATTGCC GAATCCTACG CGGATTCCCG CGGCGGCGAG
ATCTGGCTGA TCAACGCCAC CATCCCGGAA TATCTGCAGG CCAACCGCTT CAATCACGAG
CCGAAGCGGC CGCGCAAATT GCTGCTGCAC AGGAAGCAGA TCAACAAGCT GATGGGCGCG
ATCGAGCGCC AGGGCATGAC GTTGGTGCCG CTGAAACTGT ATTTCAACGA GAAGGGGCGC
GCCAAGCTGC TGCTGGCGCT CGCCAAGGGC AAGCAGCTGC ACGACAAGCG CGAGACCGAG
AAGAAGCGCG ACTGGAGTCG CGAGAAGGGA CGATTGCTGC GGGCGCGGGG CTGA
|
|---|
| Protein sequence | MAEKNERAIK VVAENRKARF NYAIEDTVEA GISLTGTEVK SVRGGKATIA ESYADSRGGE
IWLINATIPE YLQANRFNHE PKRPRKLLLH RKQINKLMGA IERQGMTLVP LKLYFNEKGR
AKLLLALAKG KQLHDKRETE KKRDWSREKG RLLRARG
|
|---|
| |