| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2425 |
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| Symbol | |
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| ID | 3909559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2781519 |
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| End bp | 2783150 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637884324 |
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| Product | indole-3-pyruvate decarboxylase |
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| Protein accession | YP_486041 |
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| Protein GI | 86749545 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | [TIGR03394] indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0467064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGC TTGCGACCGC TTTGCTCGAC GCTCTCAAGG ATCACGGCGC CAAGGAGATC
TTCGGCATCC CCGGCGATTT CGTGCTGCCG TTCTTCAAGG TGATCGAGGA GAGCGGAAGC
CTGCCTTATT TCACGCTGAG CCACGAGCCG GCGGTCGGCT TCGCGGCGGA TGCGGCGTCG
CGCTACCGCG GCGGTATCGG CGTCGCAGTG GTGACCTACG GCGCCGGCGC GTTCAATCTG
GTCAATTCGA TCGCTGGCGC TTACGCGGAG CGCTCGCCGG TGGTGGTGAT CGCCGGCGCG
CCCGGCGCGC GCGAACGCAC CAGTGGCTAT CTGCTGCACC ATCAGGTCCG CACCGTCGAC
ACGCAACTCG CGGTGTTCAA GGAAGTCACC TGCGCGCAGG CGGTGCTGAA CGATCCCGCC
ACCGCGCCGG CCGAGATCGC CCGCGTGCTG CGCAGCTCGC TGGAACTGTC GCTGCCGGTC
TACATCGAAT TCCCCCGCGA CATGGTCGAC GCCAAGGTCG AGCCGGTCGA GAAGCTGCCG
CAGCGGGCGG CCGACCCCGG CGCGTGCGCC GAATGTTCCG AGGAAATTCT TGACCGGATC
GCCAAGGCCA AGTCGCCGGT GGTCGTGGTC GACGTCGAAA TCCGCCGCTA CGGCGTCGAG
AAGCAGGTCG CCGCACTGGC GCGCAAGCTC GGCCTGCCGG TGGTGACGAC GTTCATGGGC
CGCGGGCTGC TCGAAGGCGA CGACGACGTC GTTGCCGGCA CCTATATGGG CGCCGCCGGC
GATCCCGGCC TGTCGGCGCT GGTAGAAGAG TCCGACCTGG TGCTGATGTT CGGGGTGATC
CTGTCCGACA CCAATTTCGC GCTGTCGACC AACATGACCG ATCCGCGCCG CACCGTGCTC
GCCACCGGGC GCGAGGTGCA GATCGGCCAT CACGTCTATC GTGACCTGCC GCTGGCGGAT
CTGATCGCCG GGCTCGACGC TCACGCCACG GCGCATCCGC CGCGACCGCG CAATGCTGGG
CAGGGCATGG TCTATCCGCG CAAGCTGGTC GCCGATTCCG GCGCGATCGC ACCGTCCGAT
ATCGCCACCG CGATCAACGA CCTGTTCGAC AAGCACGGCA AGATGCCGAT GACCGCCGAC
ATCGGCGACT GCCTGTTCAC CGCGATGGAG ATCGACAACA CCGCGCTGGC GGCGCCGGGC
TACTACGCCG GCATGGGCTT CGGCGTGCCG GCGGGCGTCG GCGTCGCCGC CACCGGGTTG
CGGCCGCTGA TCCTGGTCGG CGACGGCGCG TTCCAGATGA CCGGCTGGGA GCTCGGCAAT
TGTAAGCGCT ACGGCCTCGA TCCGATCGTG GTGCTGTTCA ACAATTGCAG CTGGGAGATG
CTGCGGGTGT TCCAGCCGGA GTCGAAGTTC AACGATCTCG ACGACTGGCA CTTCGCCGAC
ATCGCGCCGT CGATCGGCGG CCACGGCGTG CGCGTCACCA CCCGCGCCGA ACTCGCCGCG
GCGCTCGATG CCGCCGTCGC GCGGCGCGGG CAGTTCTCGC TGATCGAAGT GATGCTGCCG
CGTGGCGCCA CCTCGCATAC GCTGGCGCGG TTCGTCAAAG GCTTCAAGGC CGCGCGCGAG
CGGATGAAGT GA
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| Protein sequence | MPTLATALLD ALKDHGAKEI FGIPGDFVLP FFKVIEESGS LPYFTLSHEP AVGFAADAAS
RYRGGIGVAV VTYGAGAFNL VNSIAGAYAE RSPVVVIAGA PGARERTSGY LLHHQVRTVD
TQLAVFKEVT CAQAVLNDPA TAPAEIARVL RSSLELSLPV YIEFPRDMVD AKVEPVEKLP
QRAADPGACA ECSEEILDRI AKAKSPVVVV DVEIRRYGVE KQVAALARKL GLPVVTTFMG
RGLLEGDDDV VAGTYMGAAG DPGLSALVEE SDLVLMFGVI LSDTNFALST NMTDPRRTVL
ATGREVQIGH HVYRDLPLAD LIAGLDAHAT AHPPRPRNAG QGMVYPRKLV ADSGAIAPSD
IATAINDLFD KHGKMPMTAD IGDCLFTAME IDNTALAAPG YYAGMGFGVP AGVGVAATGL
RPLILVGDGA FQMTGWELGN CKRYGLDPIV VLFNNCSWEM LRVFQPESKF NDLDDWHFAD
IAPSIGGHGV RVTTRAELAA ALDAAVARRG QFSLIEVMLP RGATSHTLAR FVKGFKAARE
RMK
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