| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2335 |
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| Symbol | |
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| ID | 3908966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2683716 |
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| End bp | 2685077 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637884232 |
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| Product | pseudouridine synthase RluD |
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| Protein accession | YP_485951 |
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| Protein GI | 86749455 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.134936 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGTC GTACCAAGAA ACCCCTCGCC AAGCGCGGCC CCGGCGGCGA TCGCCCCAAA
GCCGGCCGGC CCGCCGCGAA GCGGGGGCCG GCTGCCAGCG GGCCGGTGCG CGGCAATCGC
GGCGAGGACG GCCGCCCGAT CTCGGCGCGG CCGCAGCGCG AGCCGCGTGG CGAGCGCGCC
GAGCGGCCTG CCACGAAGCG TCCCGCCGCC GAGCGACCCG AACGTCCCGC GTCCGATCGC
CCGCAGAGCG CGCGTCCCGG CCGTCCGCCG GCGCGGTTCG GCGCGTCATC CGCCACGCGG
CCGCCGCGTG CGCAGCGTCC CGAGGCCGCA ATCGAGCCCG AGAAGGCCGC CAAGCCCGAC
GCGCCGCTGC CGACCAAGGT CGAGACCGTG GTCGTCACCG CCGACGAGAA CGGCATGCGG
GTCGATCGCT TCCTCGAGGG GCGGTTTCCG GGTCTGTCAT TCTCCCACAT CCAGCGCATC
GTCCGCAAAG GCGAGCTGCG GGTGAACGGC AAGCGCGCCG ATTCCAAGGA CCGGCTGGAG
GAGGGCCAGA GCGTGCGGAT TCCGCCGCTC AAGCTCGACA CGCCGAAGGC GCCCGGGCAT
CTGTCGGAGG CCGAGCAGAA GACGCTGGCG GCGCTGAAGG CGATGACGCT GTACGAGGAC
GCCGACGTGC TGGTGCTGAA CAAGCCCGCG GGCCTGGCGG TGCAGGGCGG CAGCGGCACC
ACCAAGCACA TCGACCTGAT GCTCGAGGTG ATGCGCGACA GCAAGGGCCA GAAGCCGCGG
CTGGTGCACC GCATCGACAA GGAGACCGCG GGCTGCCTGC TGGTGGCGAA GACGCGCTTC
GCCGCCACCG CGCTGACCGG CTCGTTCCGC CACCGCTCGG CGCGGAAGAT CTACTGGGCG
CTGGTCGCCG GCGTGCCGAA GCCGAAGCAG GGCCGGATCT CGACCTATCT GGCCAAGGAG
GAGAGCGAGG ACGACAGCAT CATGCGGATC GCCGAGCACG GCGACGAGGG CGCCAGCCAC
GCGGTGACCT ACTACGCGGT GGTCGAGACC TCGGCACAGA AGCTCGCCTG GGTGTCGCTG
AAGCCGGTGA CCGGGCGCAC CCATCAGCTC CGCGCCCATA TGGCGCATAT CGGCCACGCC
ATCGTCGGCG ATCCGAAATA CTTCAACATC GAGAACTGGC AATTGCCGGG CGGCCTGCAG
AAGCGGCTGC ATCTGTTGGC GCGACGCATC GTGATTCCGC ATCCGCGCGG CGGCACCATC
GACGTCTCGG CGCCGCTGCC GCCGCACATG CTGCAGAGCT GGAACCTGCT CGGGCTGGAG
CACGACCGGT TCGATCCGAT CGAGCATGCG CCGGAAGAAT GA
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| Protein sequence | MSRRTKKPLA KRGPGGDRPK AGRPAAKRGP AASGPVRGNR GEDGRPISAR PQREPRGERA
ERPATKRPAA ERPERPASDR PQSARPGRPP ARFGASSATR PPRAQRPEAA IEPEKAAKPD
APLPTKVETV VVTADENGMR VDRFLEGRFP GLSFSHIQRI VRKGELRVNG KRADSKDRLE
EGQSVRIPPL KLDTPKAPGH LSEAEQKTLA ALKAMTLYED ADVLVLNKPA GLAVQGGSGT
TKHIDLMLEV MRDSKGQKPR LVHRIDKETA GCLLVAKTRF AATALTGSFR HRSARKIYWA
LVAGVPKPKQ GRISTYLAKE ESEDDSIMRI AEHGDEGASH AVTYYAVVET SAQKLAWVSL
KPVTGRTHQL RAHMAHIGHA IVGDPKYFNI ENWQLPGGLQ KRLHLLARRI VIPHPRGGTI
DVSAPLPPHM LQSWNLLGLE HDRFDPIEHA PEE
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