| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2260 |
|---|
| Symbol | |
|---|
| ID | 3909044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2607970 |
|---|
| End bp | 2609202 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637884156 |
|---|
| Product | Acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_485876 |
|---|
| Protein GI | 86749380 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.716497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA CGATGTCCGA TCGCCAGCGC GAATGGCTGG ACCGCGTCAC CGCCTTCATG
AACACGCATG TCCGGCCGGC GGTGCCGATC TACAAGCAGC AGGATGCCGA GGGCGACCGC
TGGAAGGTGA TTCCGATCCT CGAGGATCTG AAGAAGAAGG CCAAGGCCGA GGGCCTGTGG
AACATGTTCA TGCCGCCGTC GTCGCACGAA GACGACGAAT TCCGCGGCGC CGGCCTCACC
AATCTCGAAT ACGCGCTGCT GTCCGAGCAG ATGGGCCATA TCAGCTGGGC CTCCGAGGTG
TTCAACTGCT CGGCGCCCGA CACCGGCAAC ATGGAAGTGC TGATGCGCTA CGGCTCCAAG
GAGCACAAGC GGCAGTGGCT GCGTCCCCTG ATGGACGGCG AGATCCGTTC GGCATTTCTG
ATGACCGAAC CCGCCGTGGC GTCGTCGGAC GCCACCAACA TCGAGACCCG GATCGAGCGC
GACGGTGATC ACTACGTCAT CAACGGCCGC AAATGGTGGT CGTCGGGCGT CGGCGATCCG
CGCTGCAAGA TCGCGATCGT GATGGGCAAG ACCGATCCGA ACGCGGCCAA GCATCAGGCG
CAGTCGCAGA TCCTGGTGCC GCTCGATACC CCCGGCATCA CCATCGAAAA GATGCTGCCG
GTGTTCGGCT TCGACGACGC GCCGCACGGC CACGGCCAGG TGCTGCTCAA GGATGTCCGC
GTGCCGGTGT CGAACCTGCT GCTCGGCGAA GGCCGCGGTT TCGAAATCGC GCAGGGCCGT
CTCGGTCCGG GCCGGATTCA TCACTGCATG CGCACCATCG GCAAGGCCGA AGAGGCGTTG
GAGAAGATGG TGCGGCGGCT GCAGTCGCGC ACCGCCTTCG GCAAGAAGAT CATCGAATAC
TCGATCTGGG AACAGCGCAT CGCCGAGGCG CGGACCGACA TCGAGATGAC CCGGCTGCTG
TGCCTCAAGG CCGCCGACAT GATGGACAAG GTCGGCAACA AGACCGCCCA GCTCGAGATC
GCGATGATCA AGGTTGCGGC GCCGAACATG GCGCTGAAGA TCATCGACAA CGCGATCCAA
GCGTTCGGCG GCGGCGGTGT CTCCGATGAA GCCGGCCTGG CCAAGGATTA CGCCAACATC
CGCACGCTTC GGCTCGCGGA CGGCCCGGAC GAGGTGCACA ACCGCGCCAT TGCCCGGCTC
GAGATGAAGA AATACGCCAA CGCGGCGCAC TGA
|
|---|
| Protein sequence | MDFTMSDRQR EWLDRVTAFM NTHVRPAVPI YKQQDAEGDR WKVIPILEDL KKKAKAEGLW
NMFMPPSSHE DDEFRGAGLT NLEYALLSEQ MGHISWASEV FNCSAPDTGN MEVLMRYGSK
EHKRQWLRPL MDGEIRSAFL MTEPAVASSD ATNIETRIER DGDHYVINGR KWWSSGVGDP
RCKIAIVMGK TDPNAAKHQA QSQILVPLDT PGITIEKMLP VFGFDDAPHG HGQVLLKDVR
VPVSNLLLGE GRGFEIAQGR LGPGRIHHCM RTIGKAEEAL EKMVRRLQSR TAFGKKIIEY
SIWEQRIAEA RTDIEMTRLL CLKAADMMDK VGNKTAQLEI AMIKVAAPNM ALKIIDNAIQ
AFGGGGVSDE AGLAKDYANI RTLRLADGPD EVHNRAIARL EMKKYANAAH
|
|---|
| |