| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2240 |
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| Symbol | |
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| ID | 3909023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2566836 |
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| End bp | 2568392 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884135 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_485856 |
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| Protein GI | 86749360 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAG ATCGGATCGT TCCGATATGC GTCGGTACGC CGTCGACGCG TCGTGAAACC
TCGCGGCGAC CTGTTCGGTG CCGGGCGTCG CATATCGCAG TGCTGTTGCT GTGCGCAACC
GCGCTGTCCG GCTGTGCCGT CGGCCCGGAC TATGTCGTGC CCGGAATCGA GCTGCCGACC
GCCTGGCGCA ACGCCAGACC GCCGAAGACA CCGCCCGCTG TCCCGCAATT GAGCGAGTGG
TGGCGGCGTT TGAACGATCA GTTGCTGAAC CGGCTGATCG AGGAGGCGGT GGCGAGCAAT
CTCGACGTCG CCAGCGCGAA GGCGCGGATC CGGGAAGCGC GTGCGACCCG CCGACAGGCG
ATCGGCGCGT TGTTTCCGAC GCTCGATGGG TCCGGGTCGG CGACGCGCAA TCAGGTCAGT
GCGAGCTCCA CATCCGGCGG TTCGGCGATC ACGACCTACA ACCAGTTCCA GGCCGGGTTC
GATTCCAGTT GGGAGCTGGA CATTTTCGGC GCCAACCGCC GCAACGTCGA GGCGACGACT
TACGGCGTCG ACGTCGCCGA GGACGATCTG CGCGCGACCT TGCTGACGCT GATCGGTGAC
GTCACGTCCT ACTACGCGCA GGCGCGCGGC TATCAGGCCC GCATCGCTCT GGCGCGCCGG
ACGGCAGCCT CGCAACGCGA GACGGCAGCG TTGACGCAGC GCAAGTTCGA CGCCGGCTCC
TCGTCGGCCG TCGACGTCGC GAAGGCCGCG GCGCAGGCCG CCTCGACCGA AGCCAATATT
CCGACCTTCG AGATCTCGTA TGCGGAATCG GTTCACCGGC TCGGCGTGTT GCTGGGCCGT
GAGCCGTCTG CGCTGTCGCC GCTGCTCGCC GGCGTCAAGC CGATCCCGGC GCCGCGTTTG
CCGTTGCCGA AGGGCATCCC CGCCGACGTG CTGGTGATGC GGCCGGACGT GCGCAAGGCC
GAACGGCAAC TGGCGCAATA TACGGCGTTG ATCGGCAAGG CCGAAGCCGC GCTCTATCCG
TCGGTGAGTC TGACCGGTTC GGTTTCGACG ACCGCGCTGA AGATCGGCGA CCTCGGCAAG
AACTCGACGA TCGGCTGGTC GATCGGGCCG AGCCTGAGCG TGCCGATCTT CAACGGCGGA
CAATTGCGCG CCGCAGTCGA GATCAGCGAA GCCCAGCGCG ATCAGTACTA TGTCGCCTGG
CGCGCGGCGG TGCTGTCGGC GTTGGAGGAT GTCGAGAACG CGATCGTCTC GCTGTCGCAG
CAGCGCAAGC GGATCGGCAA TTTGTCGGAA TCGGCGCGGC GCTACGCCGA GGCGGCCCGT
CTGTCGCGCT CGCTGTACGA AACCGGGTCG TCGAGCTTCC TCGACGTTCT CGACGCCGAA
CGCTCGCTCT ACACGGCTGA AGATTCGCTG CTCGACACCA GGGTCTCGGT CGCGACCAGC
TACATCGCTC TCGCCAAGGG GCTCGGCGGC GGCTGGGACG GCATGATCGA CAGCTCGGTC
CCCGAGGTTG TGGATCTCAA CACCGGCCCG CATCTGGCCG GGGCGCGGCT CCGCTGA
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| Protein sequence | MSSDRIVPIC VGTPSTRRET SRRPVRCRAS HIAVLLLCAT ALSGCAVGPD YVVPGIELPT
AWRNARPPKT PPAVPQLSEW WRRLNDQLLN RLIEEAVASN LDVASAKARI REARATRRQA
IGALFPTLDG SGSATRNQVS ASSTSGGSAI TTYNQFQAGF DSSWELDIFG ANRRNVEATT
YGVDVAEDDL RATLLTLIGD VTSYYAQARG YQARIALARR TAASQRETAA LTQRKFDAGS
SSAVDVAKAA AQAASTEANI PTFEISYAES VHRLGVLLGR EPSALSPLLA GVKPIPAPRL
PLPKGIPADV LVMRPDVRKA ERQLAQYTAL IGKAEAALYP SVSLTGSVST TALKIGDLGK
NSTIGWSIGP SLSVPIFNGG QLRAAVEISE AQRDQYYVAW RAAVLSALED VENAIVSLSQ
QRKRIGNLSE SARRYAEAAR LSRSLYETGS SSFLDVLDAE RSLYTAEDSL LDTRVSVATS
YIALAKGLGG GWDGMIDSSV PEVVDLNTGP HLAGARLR
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