| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2169 |
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| Symbol | |
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| ID | 3909949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2462599 |
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| End bp | 2465037 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637884063 |
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| Product | putative GAF sensor protein |
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| Protein accession | YP_485786 |
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| Protein GI | 86749290 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0312851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGTG AAATCGTGCA ATCAGATCTG GACTATTCGA TTTGCGACCG CGAGCCGATC
CATATCCCCG GCGCGATCCA GCCGCACGGG GCCTTTCTCG CCGCGCGGGT CGACACTTCC
GTGGTCACGC ATGCCAGCGC CAATCTGGAC GAGATGCTCG GCATTTCCGC CGGCGCCGCG
TTGGGACAAA CGCTTCGGCA GTCGATCGGA GCGCTGGCCA GCGGCACCAT CCTGGACGCG
ATTTCCCGCG ACCACAGCGC GTTGTATCAG TTGTCCGGCT GGTACGGCAA AGACCTGCAT
CTGACTGCGT ACCGGGTCGG CCCGCAGGTC TGCATCGATG TCGAACCTGT TTCGCCGAGC
GTTGCGCCGA TCTCGCCGGT TCACCGGGTC CGCGCCGTGC TGGACGCGTT CAGGTCCGCC
GAGGGGCAGC GCGAACTCTG TGCGCTCGCG GTGCGCAGCC TGAGAGAGAT CACCGGATAC
GACCGGGTGA TGGCCTACCG CTTCGACACC GACGGCCATG GCGAAGTGAT CGCCGAGGCT
CGCGGTTGCG AGATGGATCC GTATCTGGGG CTTCACTATC CCGCATCGGA CATTCCGCCT
CAGGCCAGGC AGCTCTATCT GCGCCAGCGC GTCGGCGCGA TCGTCGATTC CCGCTATCGG
CCGGTGCCGT TGCTCACGGA CCGGACGCTC GATCACGGGA CGCCGCTCGA TCTGACCTGC
AGCACCTTGC GCAGCGTCTC GCCCTATCAT CTGGCCTACA TGCAGAACAT GCAGACCGCG
GCGAGCTTGA CGATCGGACT GGCGGAGGGG CCGGAGCTGT GGGGCATGTT GGTGTGTCAC
CATCGCACGC CGCGAAATCC GGGCCCGGAG CTGCGCGCGG CCGCCGACAT TCTGGGGCAG
TTCGTCTCCA CATTGCTGGG GCCTCTGGGT GAGGCCGAGG CCGCCAGGAA GAGGGTCGAG
CGCAACGCCA CCATGATGCG GCTCGCCGAG CAGTTCGCGT CCGCGCCGAC GATGCTCGAG
GCGTTCGCCG CGACCGAATC CGAGTTGCTT GATCTGGTCG ATGCCGCGGG CGCCATCATC
AGTTTCGCCG GGGTGGTTCG CTGCATCGGA CGGACGCCGC CGCCCGGCCA GGCCGAGCGG
GCGCTCGCGC GGCTGCGTGA TGAATCCGCC GGCGAATTGC TGGCGTGCGA CGACCTCGGC
TTGCGCCATC CCGAACTGTC CGCGTGTAAG CGGGGCGGCA GCGGCGCGCT GCTGCTGCCG
CTGGTGGGCG CGGACGACGC GATGTTGTGG TTTCGCCCGG AACAGTCGCG CACGACGCGC
TGGGGCGGCA ACCCGGCCGA ACCCGCCTTG GCCGATGCGG CCACCGGGCT GATATCGCCC
CGCGCGTCCT TCGCCGTCTG GATCCAGACC GTGAGCGGTC ATTCCGCCCC TTGGAAGGAA
GGCGATATCG CGATCGCGCA CGAATTCCGG AAACTCATTG AAGGCGAGAC GGCCCGGCGA
ACGAAGGCCG AACTCACACA GCTCCGTCTG GCTCGTGAAC AGGATCAGAT CGTCCAGGCG
GCAAGGCTGA AAGTCGCACT CGAGAATCTG CGCGACGGCG TCGCGATGTT CGACGCCGAC
AGTCGGCTGG TGATGTGCAA CAATTTGTAC GCCAAACTTT ATCGCTTGCC GGAAGCGCTG
CAACAAGTCG GCACGCATAT CCGGGACATC GTTCAGTCCT GCATCGCGAA CGGCGTCGTT
GCGGATGATA TCGGAAGTCA GGAGGAATGG CTGAAGCTGT ATGTTCTTCC GACCGATACC
TCCAGCCGGA TCCAGCAACT GTCCGATGGG CGGCTGATCA ACCTGACCCG GCAGCCTCTG
CCGGAAGGCG GCTGGGTCAG CACCCACGAG GACATCACCG AGCAGCAGCG CCGCGAGGCC
GAAATTCTCT TTCTCGCGCA CCACGACCTG CTGACCGGAC TGGCCAATCG CGCGGCGTTT
GATGAAACCG TCGAGACGGC GGTGGCGCGT CTGCAGCGGA ACGGCGAGCC GTTCACCTTG
TTCATGCTCG ATCTCGACCG GTTCAAGCAG GTCAATGACA CGTTCGGGCA CCCGGCGGGA
GACCAGTTGC TGCGGGAAGC TGCGCAACGG CTCAGATCCT CCGTCCGAAA GACCGACATT
CTCGCTCGCC TCGGCGGCGA CGAATTCGCG ATCGTTCAGT TCGGCGCAGG GGACCGCTTC
AAGGCCGCGA AGGGGCTGGC CGAGCGAATC GTCAGGTTGA TCTCGCAACC CTTCGACCTC
GGCGGGGCGC AGGTTTCGGT CGGGATCAGC ATCGGGATTG CAATAGCGCC GCACGCCGCA
ACGGATGCGG CGGCGTTGCT CAAGATGGCC GATGTTGCGC TCTATGCGGT GAAGTCCGAG
GGCCGGAATG GATTTCGATT CTTCGAGCCG GAGGCGTGA
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| Protein sequence | MASEIVQSDL DYSICDREPI HIPGAIQPHG AFLAARVDTS VVTHASANLD EMLGISAGAA
LGQTLRQSIG ALASGTILDA ISRDHSALYQ LSGWYGKDLH LTAYRVGPQV CIDVEPVSPS
VAPISPVHRV RAVLDAFRSA EGQRELCALA VRSLREITGY DRVMAYRFDT DGHGEVIAEA
RGCEMDPYLG LHYPASDIPP QARQLYLRQR VGAIVDSRYR PVPLLTDRTL DHGTPLDLTC
STLRSVSPYH LAYMQNMQTA ASLTIGLAEG PELWGMLVCH HRTPRNPGPE LRAAADILGQ
FVSTLLGPLG EAEAARKRVE RNATMMRLAE QFASAPTMLE AFAATESELL DLVDAAGAII
SFAGVVRCIG RTPPPGQAER ALARLRDESA GELLACDDLG LRHPELSACK RGGSGALLLP
LVGADDAMLW FRPEQSRTTR WGGNPAEPAL ADAATGLISP RASFAVWIQT VSGHSAPWKE
GDIAIAHEFR KLIEGETARR TKAELTQLRL AREQDQIVQA ARLKVALENL RDGVAMFDAD
SRLVMCNNLY AKLYRLPEAL QQVGTHIRDI VQSCIANGVV ADDIGSQEEW LKLYVLPTDT
SSRIQQLSDG RLINLTRQPL PEGGWVSTHE DITEQQRREA EILFLAHHDL LTGLANRAAF
DETVETAVAR LQRNGEPFTL FMLDLDRFKQ VNDTFGHPAG DQLLREAAQR LRSSVRKTDI
LARLGGDEFA IVQFGAGDRF KAAKGLAERI VRLISQPFDL GGAQVSVGIS IGIAIAPHAA
TDAAALLKMA DVALYAVKSE GRNGFRFFEP EA
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