| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1922 |
|---|
| Symbol | |
|---|
| ID | 3908001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2195051 |
|---|
| End bp | 2195821 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883816 |
|---|
| Product | trans-aconitate 2-methyltransferase |
|---|
| Protein accession | YP_485541 |
|---|
| Protein GI | 86749045 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4106] Trans-aconitate methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.146762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACT GGAGTGCCGA GCAATATCTG AAATTCGAGG ACGAGCGCAC CCGCCCGGCG
CGTGAGTTGC TGGCGCAGAT CCCTGTGGTC GCGCCCGGTA AGGTCGCCGA TCTCGGTTGC
GGGCCGGGCA ATTCGACGGA GCTCCTGGTC GAGCGTTGGC CCGATGCGTC CGTGATCGGC
GTGGATACCT CCGCCGACAT GCTGCGCCAG GCCCGCGAGC GGCTGCCGCA GCAAAAGTTC
ATCGAGGCCA ATGTGGCGCA TTGGGCGCCG CCGCCGGGCA CCGAGGTGCT GTTCGCCAAC
GCGGTGTTCC AGTGGGTGCC GGATCATCTG AAACACCTCA AGCGGCTGAT CACGGGACTC
GACGAAGGCG GCGTGCTCGC AGTCCAGATG CCCGACAATG TCGACGAGCC GTCGCACGTG
ATGATGCGCG AGGTCGCATT TCAGGAGCCG TGGCGGCACC AGCTCTCTCA GGCCGCCGAG
CTTCGCGACC TGCTGCCGAA ACCGGGCGCC TATTACGACG CCCTGCGGCC GCTGTGCAGC
CGTCTGGATA TCTGGCACAC GGTCTACAAC CACGTGCTCG ACGACGCTGC GGCGATCGTT
GAATGGGTCA AGGGCACCGG CCTGCGCCCG TTCATCGACC CGCTCGACCT GCACGAGCGC
AAGGCGTATC TGGCCGCCTA TACCGCGCGG GTCGCGGCCG CTTATCCGCC GCAGTCCGAC
GGCAAAGTTC TGTTACGCTT CCCGCGTATT TTCATCGTCG CGATCAAGTA A
|
|---|
| Protein sequence | MADWSAEQYL KFEDERTRPA RELLAQIPVV APGKVADLGC GPGNSTELLV ERWPDASVIG
VDTSADMLRQ ARERLPQQKF IEANVAHWAP PPGTEVLFAN AVFQWVPDHL KHLKRLITGL
DEGGVLAVQM PDNVDEPSHV MMREVAFQEP WRHQLSQAAE LRDLLPKPGA YYDALRPLCS
RLDIWHTVYN HVLDDAAAIV EWVKGTGLRP FIDPLDLHER KAYLAAYTAR VAAAYPPQSD
GKVLLRFPRI FIVAIK
|
|---|
| |