| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1764 |
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| Symbol | metH |
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| ID | 3909751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2018819 |
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| End bp | 2022733 |
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| Gene Length | 3915 bp |
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| Protein Length | 1304 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637883658 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_485383 |
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| Protein GI | 86748887 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.075059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0106397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCCA TGACCAAGCC GACATCCCCG AAGCGGACCG AACTGCTGGC GCTGACCCGC
GAGCGCATCC TCGTGCTCGA CGGCGCGATG GGCACGATGA TCCAGGCGCT GCAGTTCGAC
GAGGCTGCGT TCCGCGGCGA GCGCTTCAAG GATTTCCATC GCGACCTGCG CGGCAACAAC
GACCTGTTGA TCCTGACCCA GCCGCAGGCG ATCGAGGACA TCCACGCGCA ATATCTGCGC
GCCGGCGCCG ACATCGTCGC CACCAACACC TTCTCCTCGA CCTCGATCGC GCAGGCGGAC
TACGACCTGT CCGAGATCGC CTATGAAATG AGCCGTGACG GCGCCCGCCT CGCCCGCAAC
GCCGCCGACA CGGTGCAGGC CGAGGACGGC AAGCCGCGCT TCGTCGCCGG CGCGATCGGC
CCGACCAACC GCACCGCCTC GATCTCGCCC GATGTCGCCA ATCCGGGCTA TCGCGCGGTG
ACCTTCGACG ATCTGCGCAT CGCCTATGGC GAGCAGATCA ACGGGCTGCT CGACGGCGGC
GCCGACCTGC TGCTGGTCGA GACTATTTTC GACACGCTCA ATGCCAAGGC GGCGCTCTAC
GCGATCGCCG AGATCAGCGA GGCGCGCGGC ATCGACGTGC CGGTGATGAT CTCCGGCACC
ATCACCGACA AATCCGGACG GCTCTTGTCC GGGCAATTGC CGGAAGCGTT CTGGAATTCG
GTGCGACATG CCAAGCCGAT CACCATCGGC TTCAACTGCG CGCTCGGCGC CAAGGATCTG
CGCGCGCACA TCGCCGATAT CGGCCGCGTC GCCGATACGC TGGTCTGCGC CTATCCCAAC
GCCGGCCTGC CCAACGAATT CGGCCAGTAC GACGAGAGCC CGGACTACAT GGCATCGCTG
GTCGGCGAAT TCGCAGAGGC CGGCCTCGTC AACATCGTCG GCGGCTGCTG CGGCACCACG
CCGGCGCATA TCGCGGCGAT CGCCAAGGCC GTGGCGCCGC ACAAGCCGCG CGTCGTGCCC
GTGATCGAAC CGCGGCTGCG ATTGAGCGGG CTCGAGCCGT TCGAACTCAC CCAAGCTATT
CCGTTCGTCA ATGTCGGCGA GCGCACCAAC GTCACGGGCT CTGCGAAATT CCGCAAGCTG
ATCACCGCCG GCGACTACGC CGCGGCGCTA CAGGTGGCGC GCGACCAGGT CGAGAACGGC
GCGCAGATCA TCGACGTCAA CATGGACGAA GGGCTTCTGG ATTCCGAAGC CGCGATGGTG
ACCTTCCTCA ACCTGGTCGC CGCCGAGCCG GACATCGCCA AGGTGCCGGT GATGGTCGAT
AGTTCGAAGT TCGCCGTGAT CGAGGCCGGC CTGAAATGCG TTCAGGGCAA GCCGGTGGTG
AACTCGATCT CGCTGAAGGA AGGCGAGGAC AAGTTCCTGC ACGAGGCCAG GATCGCGCGC
CGCCACGGCG CCGCGGTCGT CGTCATGGCG TTCGACGAAC AGGGCCAAGC CGACACTTAC
GCGCGCAAGA CCGAGATCTG CAAACGCGCC TACGACATTC TGGTCGAGCG GATCGGCTTC
CCGCCGGAAG ACATCATCTT CGATCCGAAT ATCTTCGCGA TCGCGACCGG GCTGGAAGAA
CACAACAATT ACGGCGTCGA CTTCATCGAG GCGACGCGCT GGATCCGCCA GAACCTGCCG
CACGCGCATA TCTCCGGCGG CGTCTCGAAT CTCTCGTTCT CGTTCCGCGG CAACGAGCCG
GTGCGCGAGG CGATGCACTC GGTGTTCCTG TATCACGCCA TCAAGGCCGG CATGGACATG
GGCATCGTCA ATGCCGGGCA GATGATCGTG TATGACGACA TCGATCCCGA ACTGCGCCAA
ACTTGCGAGG ACGTCATCCT CAATCGCGAC CCGGGCGCCT CCGAGCGGCT GCTGGCGCTC
GCCGAAAAGT ATCGCGGCCA GGGCAAGGCG GTGAAGGAGC AGGACCTCGC CTGGCGTTCG
TGGCCGGTCG AGCAGCGGCT CAGCCACGCG CTGGTGCACG GCATCACCGA ATATATCGAG
ACCGATACCG AGGAAGCCCG CGCCAAAGCA GAACGACCGC TGCACGTGAT CGAAGGCCCG
CTGATGGCCG GCATGAACGT CGTCGGCGAT CTGTTCGGCG ACGGCAAGAT GTTCCTGCCG
CAGGTGGTGA AATCCGCTCG CGTGATGAAG CAGGCGGTCG CCTATCTGAT GCCGTTCATG
GAAGCCGAGA AGGCCGCCCA GCTTGCCGCC GGCACCCACA CCGGCGAGCG CGCCACCGCC
GGCAAGATCG TGCTCGCCAC CGTCAAGGGC GACGTCCACG ACATCGGCAA GAACATCGTC
GGCATCGTGC TCCAGTGCAA CAATTTCGAG GTGATCGACC TCGGCGTGAT GGTGCCCGCC
GCGAAGATCA TCGAGACCGC GATCGCCGAG CAGGCGGACA TCATCGGCCT GTCCGGCCTG
ATCACGCCGT CGCTCGATGA AATGAGCTTC CTCGCCTCCG AGATGCAGCG CAACGGCCTC
GACATGCCGC TGCTGATCGG CGGCGCCACC ACCAGCCGGG TCCACACCGC GGTGAAGATC
GACCCGTCCT ATCCGGCCGG CAGCGTCGTG CACGTCAATG ACGCCAGCCG CGCGGTCGGC
GTCGCATCGT CGCTGCTGTC GCGCGAGCGC GGCCCGGCCT ACGCCGCCGA GATCCGCGCC
GACTACGCCC GGATCACCGC GGCGCATCTG CGCGCGCAGG CCGACAAGAA GCGCGTCGCG
CTGAAAGACG CCCGCGCCAA TGCGACGAAG ATCGACTGGT CGGCGGCGAA GCCGGTGAAG
CCGTCGTTCC TCGGCGTCCG CAGCTTCATC AACTATCCAC TCGCCGAACT GGCCGAGACC
ATCGACTGGA CGCCGTTCTT CCAGAGCTGG GAGCTCGCCG GGCGCTTCCC CGCGATCCTC
GACGACAAGG TGGTCGGCGA GGCCGCGCGC TCGCTCTATG CCGACGCCCG CAAGATGCTT
GAGCGGATCG TCGCCGAGAA CTGGTTCACC GCCAAGGCGG TGATCGGATT CTGGCCGGCG
AATGCGGTCG GCGACGACAT CATCCTGTAT GCCGACGACG ACCGCGACGC CTCGATCGGC
GCGCTGCACA CGCTGCGCCA GCAGTTGGTC AAGCGCGAGG GCCGCGCCAA TGCGGCGCTG
TCGGATTTCA TCGCGCCGCG CGGCGTGCAG GACTATATCG GCGCCTTCGT CGTCACCGCC
GGGATCGGCG AGGACGTGAT CGCCGACAAA TTCAAGGCCG ACAATGACGA CTATTCGTCG
ATCATGGTCA AGGCGCTGGC CGATCGTCTG GCGGAGGCCT TCGCCGAGCG GATGCACGCC
CGCGTTCGCC GCGAATTCTG GGGCTACGCG CCGGACGAGA GCCTGTCGGT GGATGAGCTG
ATCCTCGAGA AGTATCAGGG CATCCGCCCG GCGCCGGGCT ATCCGGCGCA GCCCGACCAC
ACCGAGAAGG CGACGCTGTT CAAGCTGCTC GAAGCCGAGG TCAATGCCGG CGTGACGCTG
ACCGAGTCAT ATGCGATGTG GCCCGGCTCG TCGGTGTCGG GGCTGTATTT CAGCCATCCG
CAGAGCGCCT ATTTCGGCGT CGGCAAGATC GAGCGCGACC AGGTCGAGGA CTACGCGCTG
CGCAAGGGCT GGAGCGTCAC CGAGGCCGAG CGCTGGCTCG CCCCGGTGCT GAACTACATC
CCCGAGCCGC AGCCCGCCGG TGCCCGCGCC CAGGAGCCGA TGCCGCCGCT GGCGCCGTCC
GGCGACCTGC TGCCGACCGA GCCGCCCGCC GATGCGGCGT TCACCGCGAA CGACGCCGCC
CTCGCCGCCC ACCCCGCCGG CTGCAACTGC GCGGTGCATC TGATGTGGCG GAAGACGGCG
GTCGGGGCGA AGTAG
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| Protein sequence | MNSMTKPTSP KRTELLALTR ERILVLDGAM GTMIQALQFD EAAFRGERFK DFHRDLRGNN
DLLILTQPQA IEDIHAQYLR AGADIVATNT FSSTSIAQAD YDLSEIAYEM SRDGARLARN
AADTVQAEDG KPRFVAGAIG PTNRTASISP DVANPGYRAV TFDDLRIAYG EQINGLLDGG
ADLLLVETIF DTLNAKAALY AIAEISEARG IDVPVMISGT ITDKSGRLLS GQLPEAFWNS
VRHAKPITIG FNCALGAKDL RAHIADIGRV ADTLVCAYPN AGLPNEFGQY DESPDYMASL
VGEFAEAGLV NIVGGCCGTT PAHIAAIAKA VAPHKPRVVP VIEPRLRLSG LEPFELTQAI
PFVNVGERTN VTGSAKFRKL ITAGDYAAAL QVARDQVENG AQIIDVNMDE GLLDSEAAMV
TFLNLVAAEP DIAKVPVMVD SSKFAVIEAG LKCVQGKPVV NSISLKEGED KFLHEARIAR
RHGAAVVVMA FDEQGQADTY ARKTEICKRA YDILVERIGF PPEDIIFDPN IFAIATGLEE
HNNYGVDFIE ATRWIRQNLP HAHISGGVSN LSFSFRGNEP VREAMHSVFL YHAIKAGMDM
GIVNAGQMIV YDDIDPELRQ TCEDVILNRD PGASERLLAL AEKYRGQGKA VKEQDLAWRS
WPVEQRLSHA LVHGITEYIE TDTEEARAKA ERPLHVIEGP LMAGMNVVGD LFGDGKMFLP
QVVKSARVMK QAVAYLMPFM EAEKAAQLAA GTHTGERATA GKIVLATVKG DVHDIGKNIV
GIVLQCNNFE VIDLGVMVPA AKIIETAIAE QADIIGLSGL ITPSLDEMSF LASEMQRNGL
DMPLLIGGAT TSRVHTAVKI DPSYPAGSVV HVNDASRAVG VASSLLSRER GPAYAAEIRA
DYARITAAHL RAQADKKRVA LKDARANATK IDWSAAKPVK PSFLGVRSFI NYPLAELAET
IDWTPFFQSW ELAGRFPAIL DDKVVGEAAR SLYADARKML ERIVAENWFT AKAVIGFWPA
NAVGDDIILY ADDDRDASIG ALHTLRQQLV KREGRANAAL SDFIAPRGVQ DYIGAFVVTA
GIGEDVIADK FKADNDDYSS IMVKALADRL AEAFAERMHA RVRREFWGYA PDESLSVDEL
ILEKYQGIRP APGYPAQPDH TEKATLFKLL EAEVNAGVTL TESYAMWPGS SVSGLYFSHP
QSAYFGVGKI ERDQVEDYAL RKGWSVTEAE RWLAPVLNYI PEPQPAGARA QEPMPPLAPS
GDLLPTEPPA DAAFTANDAA LAAHPAGCNC AVHLMWRKTA VGAK
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