| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1689 |
|---|
| Symbol | |
|---|
| ID | 3908676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1924351 |
|---|
| End bp | 1925598 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883583 |
|---|
| Product | Acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_485308 |
|---|
| Protein GI | 86748812 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.777163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCG ACGATACCCC GCAGGAAGCC GAATTCCGCG CCAAGGCTCG CGCGTGGATC
GACGCCAACG CGCCGAAGCA GTACGAAGCG GAACTGACCA AGTCCGGCCT CGGCCGCATC
AGCCTGAAGA ACGCCGACAT CGTCGAGGTC GGCAAGGCGT GGCAGAAGAA GAAGGCCGAG
GGCGGCTGGG CCTGCCTGAC CTGGCCGAAG GAGTATGGCG GTCGCGGCGC CACGCCGATC
GAGAAGGTGA TCTGGCAGCA GGAAGAGGGC GTGTACGGCA AGCTGACGCA GCCGTTCCAG
ATCGGCGAGG GCATGTGCGG CCCGACGGTG ATGGCCTATG CCAGCGAGGA CGACAAGCGC
AACTATCTGC CGAAGCTCGC CTCGGGCGAG AACATCTGGT GCCAGTTGTT TTCCGAGCCG
GCCGGTGGCT CGGACGTCGC CGGGCTGCGC ACCCGCGCCG AGAAGGATGG TGACGACTGG
GTGATCAACG GCCAGAAGAT CTGGACCTCG GGCGCGCACT ACTCCGACTA CGGCCTGCTG
ATTACCCGCA CCGACCCCAA TGTGCCCAAA CACAAGGGCC TCACCATGTT CTTCCTCGAC
ATGAAGAGCG AAGGCGTCGA GGTCAAGCCG ATCAAGCAGG CCAATGGCAT GCAGGAATTC
AACGAGGTGT TCTTCACCAA TGTGCGGATT CCGGACAGCC AGCGGCTCGG CGCCGTCGGC
GACGGCTGGA ACGTGTCGCT GACCACGCTG ATGAACGAGC GGATGTCGAT CGGCGCGCGG
CTCGCCACCG GCTTTCCGGA GATCTTCGAT CTCTGCTCGA ACCTCGTCAC CGCCGACGGC
CTTGCGATCG ACGATTCCGC CGTGCGGAGC AAACTCGCGA ACTGGGCGGT CAAGGCGAGC
GGGCTGAAGT ACACGTCGTA TCGCTCGATC TCGGCGCTGT CGAAGGGCGA ACGGCCGGGC
CCCGAGAACT CGATCGGCAA GCTGGTCGCG GGGCCGATGC TGCAGGACAT CGCCGCGTTC
GCGATGGACC TCGAAGGCGC GGCCGGAATG TTCACCGATC CCCAGGAGGC CGAGGCCGGC
GGCAGCTTCC AGGCGATGCT GCTGTCGTCG CCGTCGATGC GGATCGCCGG CGGCACCGAC
GAAATCCTGC GCAACATCAT CGCCGAGCGC GTGCTTGGCT TGCCCGGCGA CATCCGCGTC
GACAAGGACG TGCCGTTCAA CCAGATCCCG ACACGGGGGC GCGGTTAA
|
|---|
| Protein sequence | MNFDDTPQEA EFRAKARAWI DANAPKQYEA ELTKSGLGRI SLKNADIVEV GKAWQKKKAE
GGWACLTWPK EYGGRGATPI EKVIWQQEEG VYGKLTQPFQ IGEGMCGPTV MAYASEDDKR
NYLPKLASGE NIWCQLFSEP AGGSDVAGLR TRAEKDGDDW VINGQKIWTS GAHYSDYGLL
ITRTDPNVPK HKGLTMFFLD MKSEGVEVKP IKQANGMQEF NEVFFTNVRI PDSQRLGAVG
DGWNVSLTTL MNERMSIGAR LATGFPEIFD LCSNLVTADG LAIDDSAVRS KLANWAVKAS
GLKYTSYRSI SALSKGERPG PENSIGKLVA GPMLQDIAAF AMDLEGAAGM FTDPQEAEAG
GSFQAMLLSS PSMRIAGGTD EILRNIIAER VLGLPGDIRV DKDVPFNQIP TRGRG
|
|---|
| |