Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1639 |
Symbol | |
ID | 3909916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 1867716 |
End bp | 1869464 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637883533 |
Product | Type I secretion system ATPase, PrtD |
Protein accession | YP_485258 |
Protein GI | 86748762 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.60166 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATCCC CGGCCGTTGT GACCGCGCGA ACATTGCTCC GCCAGTGCGG ATATGGCGCA AAGTATGTTT TCATCACCAG CCTGTTCATC AACGTGCTGG TGCTGACCTC GCCGCTCTAC ATGCAGCAGG TGTTCGACCG CGTGGTGCAG ACCCAGCACT ACGCCACACT GGTCTATCTG ACGCTGATTT CGGTTTTCGC GCTGGCGGTG ATGGGGGCGC TGGATGCGCT GCGCGGCATC GGGCTGTCGC GGCTCGGCCG CTGGATCGAC GACTCGCTGC GGTCCGAGGT GATGTACACG GCGCTCCACC ACGCCCGCAC CGAGGGCCGC CTCAACAGCC AGGTGATCGG CGATCTCGCT ACGCTGAGGG GGTTTGCCGG CGGCCAGCAG ATCGTGCCGT TCTTCGACGC GGTGTGGATG CCGATGTTCC TGTTGCTGAT GTTCGTCCTG CATCCCTGGC TGGGGGTGAT CGGTTTGTTT TCCGCGGTGC TGCTGTTCGG GCTGGCGGTG TGGAATGATA TCGGCATGCG GCATCGGCTG GCCGGTCTGT CCGCCGCGCA GGCCAAATTG TCGGCATTTT CGTCGACCGC TTTGCGCAGC GCCGACGTGA TCCACGGCAT GGGCATGTTC GACGCCGTGA TGAAGCGCTA CAAGACCGAC GCGGTCGAGA TCGCGGAGAA ATCCCAGGCG GCGAACGATT TCGGCGCCAA ACTCGGCGGT CTGTCGAAGT TCGTGCGGAT CACCGTGCAG GTCGCGGTGC TGTGCGTCGG CGCGTTGCTC GTCATCAACA GCGAGATGAC CAGCGGCGCG ATGATCGCAG CCTCGATCAT CTTGGGGCGG GCGCTGGCGC CTGTGGAGCA GTCGATGGCG TCGTGGCGCT CGTTCATCGC CGCGCGAGAA TCCTATCGGC GGATCAACGA CCTGATCACC AAGGCCGAGG CGCGCTCGGT TGCGACCGCA AGATTGCCGG AGCCGAAGGG CGTCGTGAGC ATCGAGAACC TATCGTTCAA GTTCGGCGGC ACCGACCGTC CGGTGCTGAA GAACGTCAAT CTGACCGTGC CGGCGGGATC GGTGCTGGCG CTGGTCGGTC CTTCCGCCAG CGGCAAGAGC ACCCTGTGCA AGATGATCGT GGGGTCGTGG TTGCCGGGTG GCGGTTCGGT GCGGCTCGAT GGTGCGCAGA TTCAGCACAT CGATCGCAAC CAGGTTTCGG AATGGATCGG CTATCTCCCG CAATCGATCG AACTGTTCAA CGGCTCGGTG CACGACAACA TCGCCCGGTT CAAGGAGGCC GGCGATGACG CCGTGGTCGC TGCCGCCAAC CTCGCCGGCT GCCATGAACT GATCCTGCGG CTTCCCGACG GCTACGCCAG CGAGCTCGGC GAGAGCGCCG GCAATCTGAG CGGGGGGCAG AAGCAGCGGA TCGCGCTGGC GCGCGCGGTG TTCGGCAATC CCAAACTCGT GGTCCTCGAC GAGCCGAATT CAAATCTCGA TTCCGAGGGC GAGGCGGCTC TGGTCGCCGC GGTCGTCGCG CTGAAGAAGC AGGGAGCGAC GGTCATCCTC GTCAGTCATC GCCTGTCGAT CCTGTCACCG GTCGATTTCA TCGCGGTGAT GCGGGACGGC ACCATCGAAA TGGCCGGCGA GCGGGAAGAG GTGTTGCGCG AACTCTCCAG CCGCGCCGCG CGCAGCGGAA ACGATCAAAC CATGCCGGTG CCGGCCCGCG CGTCGGGTGC CGCGCCGGCT CACCAGTGA
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Protein sequence | MQSPAVVTAR TLLRQCGYGA KYVFITSLFI NVLVLTSPLY MQQVFDRVVQ TQHYATLVYL TLISVFALAV MGALDALRGI GLSRLGRWID DSLRSEVMYT ALHHARTEGR LNSQVIGDLA TLRGFAGGQQ IVPFFDAVWM PMFLLLMFVL HPWLGVIGLF SAVLLFGLAV WNDIGMRHRL AGLSAAQAKL SAFSSTALRS ADVIHGMGMF DAVMKRYKTD AVEIAEKSQA ANDFGAKLGG LSKFVRITVQ VAVLCVGALL VINSEMTSGA MIAASIILGR ALAPVEQSMA SWRSFIAARE SYRRINDLIT KAEARSVATA RLPEPKGVVS IENLSFKFGG TDRPVLKNVN LTVPAGSVLA LVGPSASGKS TLCKMIVGSW LPGGGSVRLD GAQIQHIDRN QVSEWIGYLP QSIELFNGSV HDNIARFKEA GDDAVVAAAN LAGCHELILR LPDGYASELG ESAGNLSGGQ KQRIALARAV FGNPKLVVLD EPNSNLDSEG EAALVAAVVA LKKQGATVIL VSHRLSILSP VDFIAVMRDG TIEMAGEREE VLRELSSRAA RSGNDQTMPV PARASGAAPA HQ
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