Gene RPB_1568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1568 
Symbol 
ID3908767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1767329 
End bp1767658 
Gene Length330 bp 
Protein Length109 aa 
Translation table11 
GC content68% 
IMG OID637883464 
Productcarboxymuconolactone decarboxylase 
Protein accessionYP_485189 
Protein GI86748693 
COG category[S] Function unknown 
COG ID[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.630321 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCGATT CGCTGGCCGA GATCGCGCCG GATTTCGCCC GCTATGTGAT CGAGTTTCCG 
TTCGGCGACA TCTACAGCCG CCCCGGCCTC GACCTGCGCG CCCGCGAGAT CGCGACCATC
GCCGCCCTGA CCGCGATGGG CAACGCCACG CCGCAGCTCA AGGTCCATAT CGAGGCCGGG
CTGAATGTCG GCCTCAGCCG CGCCGAGATC ATCGAGATCA TCATGCAGAT GGCGGTCTAT
GCCGGATTCC CGGCGGCGCT GAACGGCCTG TTCGCAGCCA GGGACGTGTT CGCCGCGCGC
ACGGCATCCG GTCAGGCGCC CGCGGCATGA
 
Protein sequence
MIDSLAEIAP DFARYVIEFP FGDIYSRPGL DLRAREIATI AALTAMGNAT PQLKVHIEAG 
LNVGLSRAEI IEIIMQMAVY AGFPAALNGL FAARDVFAAR TASGQAPAA