Gene RPB_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1548 
Symbol 
ID3908747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1744455 
End bp1746398 
Gene Length1944 bp 
Protein Length647 aa 
Translation table11 
GC content63% 
IMG OID637883444 
Productasparagine synthase, glutamine-hydrolyzing 
Protein accessionYP_485169 
Protein GI86748673 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0367] Asparagine synthase (glutamine-hydrolyzing) 
TIGRFAM ID[TIGR01536] asparagine synthase (glutamine-hydrolyzing) 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.545574 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCGGTG TCGCCGGCGT CGCGAGTGCC CGGGGAGTCC GGGTCGAGTT CGAGATCCTG 
AAGCGGATGA CCGATGCGCT CGCGCATCGC GGCCCGGATG GAGAGGGGCA CTGGCTGTCC
GAGGACGGCG AGGTCGCGCT CGGGCACCGA CGGCTGTCGA TCATCGATCT GTCCTCGCAC
GGCGCTCAGC CCATGGTGTC GGCGTCCGGC AGATTCGCGA TGTCCTACAA CGGCGAAGTC
TACAACTACC TGGAGCTGCG CGACGAGCTG CTGCGCGCCG GCTATCCGTT CCACGGCCAG
TCGGACACCG AAGTCATCGT CGCGGGTTTC GACCATTGGG GAATCGAAAA CACCATATCG
AGGCTGGCGG GCATGTTCGT GATCGCGGTC TGGGACCGGC GCGACAAGAC CTTGTCGCTG
GTCCGCGACC GCATCGGCAT CAAGCCGCTG TACTACTCAG TGATCGACGG TGCGCTGGCT
TTCGCATCCG AACTGCGGCC GATCGTTGTT TGGCGAGGCA GCCTTCCGGA GATCTCCCGT
CGCGGCCTCT CGGAATTCCT GCGGCTCGGA TACGTTCCCT CGCCACTGAG CATTTTCGAG
GGGGTTTTCA AGCTTCCGCC GGCGACGATC GCCACCTTCA GCGGTGGGCA TCTGTCCGAA
CCGAAGCCTT ACTGGTCGGT CGATGCAACG GTTGCACGCG GTTTCGCCAA TCTGAGGATG
GACGAGACCG AGGTTCTCGA TCAGCTTGAT ACCCGGTTGG GGGATATCGT CGCCCAGCAT
ATGGTTTCCG ATGTTCCGCT GGGCGCCTTC CTGTCCGGTG GCATCGATTC CAGCGTCGTG
ACCGCGCTGA TGCAGGCCAG AAGCTCGTCG GCCGTCAAGA CGTTCTCGAT CGGTTTCGAC
AGTGCCGCTT ACAATGAGGC CGGCTACGCC GCCGAGGTTG CGGCGCATCT CGGCACAGAT
CACACCGAAC TCTACATCAC CGAAGCGGAT GCGCTGGCGG TGGTGCCGTC GCTTCCCGAC
ATCTACGATG AGCCTTTCGC AGACATCTCG CAAATTCCGA CCTTCCTCGT CGCCGAGCTG
GCGCGCCAAA AGGTCACTGT GAGCCTCTCG GGCGACGGCG GCGACGAATT GTTCGGCGGC
TACAATCGCT ACATGTTCGT TTCGAACTAC TGGAGCCGGC TCAGCAAGAT TCCGCTCCCG
CTGCGACGCG TGGCGGCGTC GGCCATCGCC GCGCCGTCGT CGGCCGGCTG GGACAGGATA
TTCGACCTGC TTGGACCGAT GTTGCCTGGG AATGCGCGCC CCGCATTGCC TGGACAAAAG
ATGCAGAAGA TCGGTTCGGT GCTGTCGGCG GCCTCCCTGT CCGAGTTGCA GGGGCGGCTG
ATCGCCCAAT GGCCCCATCC AGAAGCCGTC ATGGCGCAGG GCTTTGGTGC AGGCTCGGCG
CTGATGCTGC CCCCGGCGTC GCAAGTTCCC GATCTTCCCG CCGCGGCGCA GCAGATGGCA
TGGGATACCA GCAGCTATCT GGTCGATGAT ATTCTGACGA AGGTCGATCG TGCCACCATG
CGGGTGGGTC TCGAGGCTCG CGTCCCGCTA TTGGATCACC GCCTGGTCGA GTTCGCCTGG
GAGATTCCGC TGGACATGAA GTTCCGAGAC GGGTCCGGCA AGCACATCCT GAAGCGGTTG
CTCGGTCGCT ACGTTCCGCG CGCGATGTTC GACCGTCCCA AGATGGGGTT TGGCGTTCCG
GTGGACGACT GGCTCAGGGG GCCTCTCAGG GAATGGGCGG CGAGCTATCT TGCCGCGGCT
CGTCACGGCG ATGACTATCT CGACCGCGGC GTCATCGCGG CGACGTGGAA AGAGCATCTG
AACGGCAAGA TCAACCGCGG CGGACAGCTT TGGACAATCC TGATGTTTGA TATCTGGCAC
CAGAGAATTC GCCAATGGGT GTGA
 
Protein sequence
MCGVAGVASA RGVRVEFEIL KRMTDALAHR GPDGEGHWLS EDGEVALGHR RLSIIDLSSH 
GAQPMVSASG RFAMSYNGEV YNYLELRDEL LRAGYPFHGQ SDTEVIVAGF DHWGIENTIS
RLAGMFVIAV WDRRDKTLSL VRDRIGIKPL YYSVIDGALA FASELRPIVV WRGSLPEISR
RGLSEFLRLG YVPSPLSIFE GVFKLPPATI ATFSGGHLSE PKPYWSVDAT VARGFANLRM
DETEVLDQLD TRLGDIVAQH MVSDVPLGAF LSGGIDSSVV TALMQARSSS AVKTFSIGFD
SAAYNEAGYA AEVAAHLGTD HTELYITEAD ALAVVPSLPD IYDEPFADIS QIPTFLVAEL
ARQKVTVSLS GDGGDELFGG YNRYMFVSNY WSRLSKIPLP LRRVAASAIA APSSAGWDRI
FDLLGPMLPG NARPALPGQK MQKIGSVLSA ASLSELQGRL IAQWPHPEAV MAQGFGAGSA
LMLPPASQVP DLPAAAQQMA WDTSSYLVDD ILTKVDRATM RVGLEARVPL LDHRLVEFAW
EIPLDMKFRD GSGKHILKRL LGRYVPRAMF DRPKMGFGVP VDDWLRGPLR EWAASYLAAA
RHGDDYLDRG VIAATWKEHL NGKINRGGQL WTILMFDIWH QRIRQWV