| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1302 |
|---|
| Symbol | |
|---|
| ID | 3908175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1484431 |
|---|
| End bp | 1485273 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637883196 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_484923 |
|---|
| Protein GI | 86748427 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.516899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCCG GCGACGGTCA CACCGCCGCC TGCCTGATCG GCTGGCCCGC GGCGCATTCG
CGCTCGCCGC TGATCCATCA TTACTGGCTG CGGACGCTCG GCATCCCCGG CGGCTATTCG
ATCGAATCGG TGCCGCCGGA AGGCTTCGCC GAATTCGTCC TGAACCTGCG GGCGCACGGC
TACAGCGGCG CCAACGTCAC CATCCCGCAC AAGGAGCGCG CGCTGCAACT GACGCAGCCG
GACGACCGCG CCCGCGCGGT CGGCGCCGCC AATACGCTGT ATTACGACGG CGATGTGCTG
CGCTCGACCA ATACCGACGT CGAGGGCTTC ATCGCCAATC TCGACGCCAG CGCGCCGGGC
TGGGATCGTA CCCCGCATGC CGTGGTGCTC GGCGCCGGCG GCTCTGCGCG CGCGGTGCTG
TTCGGCCTGC TGGAGCGCGG CATCGAACGC ATCGCGCTCG CCAACCGCTC GCTCGAGCGC
GCGCAGGCGC TGGCCGATCT GTTCGGCGAA CGCGTTGTGC CGATCGCCTG GACCGACGCG
CCGGCGGCGC TGCCGGGCGC CGGCCTGCTG GTCAACACCA CCTCGCTCGG CATGAAGGGG
CAGCCGTCGC TCGATCTCGA TCTCGAGCCG CTGCCGAGCG ACGCCACCGT CGCCGATCTG
GTCTATGTGC CGCTCGAGAC CGAACTGCTC GCCGAGGCGC GCGGCCGCGG CCTGCGCACC
GCCGACGGCC TCGGCATGCT GCTGCATCAG GCGGTGCGCG GCTTCGAATT GTGGTTCGGC
GCGCGGCCGC ACGTCACCGC CGAACTGCGC GCTTTGGTCG AAGCGGATCT GGCGGCGAAG
TAG
|
|---|
| Protein sequence | MHPGDGHTAA CLIGWPAAHS RSPLIHHYWL RTLGIPGGYS IESVPPEGFA EFVLNLRAHG
YSGANVTIPH KERALQLTQP DDRARAVGAA NTLYYDGDVL RSTNTDVEGF IANLDASAPG
WDRTPHAVVL GAGGSARAVL FGLLERGIER IALANRSLER AQALADLFGE RVVPIAWTDA
PAALPGAGLL VNTTSLGMKG QPSLDLDLEP LPSDATVADL VYVPLETELL AEARGRGLRT
ADGLGMLLHQ AVRGFELWFG ARPHVTAELR ALVEADLAAK
|
|---|
| |