| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1272 |
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| Symbol | fliF |
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| ID | 3908145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1458328 |
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| End bp | 1459926 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637883166 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_484893 |
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| Protein GI | 86748397 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000378845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.795293 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGAGTT TGCTGGGTTT CCTGAAAGGC TTGGGCGCCG CCCGGGTGAT GGCCATGATC
GCCGTCACCA TGGCGCTGCT CGGCTTTTTC GCCTTCGTCA TCATGCGCGT GTCGCAGCCG
CAGATGACGA CCCTCTATAC CGACCTCAGC GTCGAGGACT CCTCCAGCAT CATCAAGGAG
CTGGAGCGCC AGGCGATCCC GTTCGAAATG CGCAATGACG GCGCCATTCT GATGGTGCCG
AAAGACAAGG TGACCCGGCT GCGGATGAAG CTGGCCGAGG GCGGACTGCC GAAGGGCGGC
GGCGTCGGCT ACGAGATCTT CGACAAATCC GACGCGCTCG GCACCACCAG CTTCGTCCAG
AACATCAACC ATCTCCGCGC GCTGGAAGGC GAATTGTCCC GCACCATCCG GGCGATCGAC
CGGGTTCAGG CGGCGCGGGT GCATCTGGTG CTGCCGGAGC GGCCGTTGTT CTCGCGCGAG
ACGCCGGAGC CGTCGGCGTC GATCGTGCTG AGGGTGCGCG GCGCGCTGGA GCCGCAGCAG
GTCCGCGCCA TCCGCCATCT GGTCGCCTCC GCGGTCAACG GCCTGAAGCC GCAGCGGGTC
TCGATCGTCG ACGAGGGCGG CCAGTTGCTC GCCGACGGCT CGGCCAGCGC CAATGCCGCC
GACGGCGCCG CCGGCGACGA ACGCCGCACC AGCTTCGAGA AGCGGATGCG CAACGAGATC
GAGGGCATCG TGTCCTCGGT CGTCGGCTCC GGCCGCGCCC GGGTCCAGGT CACCGCCGAT
TTCGATTACA ACAAGATCAC CCAGACTTCG GACAAGTTCG ACCCCGAAGG CCGGGTGCTG
CGCTCCAGCC AGACCCGCGA AGAGCAGGCG CAGACCTCCG CGGCCGACGG CCAGGTCACC
GTCAACAACG AACTGCCGGG CAATCAGGCC CCGGGCGGCG CCGGCGCGCG GGACCAGAGC
AAGAAGTCCG AGGAGACCAA CAATTACGAA ATCTCCCGCG TCACCAAGAC CGAGGTGACC
GAGGCCGGCC GGGTCAACCG GCTGTCGGTC GCGGTGCTGG TCGACGGCAG TTACACCAAA
GACGAGAAGG GCGAGCTGGT CTACGCCGAG CGGCCGAAGG AGCAGCTCGA CCGCATCGCC
GCGCTGGTGC GCTCGGCGAT CGGCTTCGAC CAGAAGCGCG GCGACCAGAT CGAGGTCGTC
AATCTGAGAT TCGCGGAGGC GCCGCAGGTC GAGAAACTGC CGGAGCCCGC CGGCCTGCTC
GGCATGCTGC AATTCACCAA GGACGACATC ATGAACATGA TTCAGCTCGG CGTGATGTTC
GTGCTCGGCC TGGTGGTGCT GTTCATGGTG ATCCGCCCGC TGGTCAAGCG CGTGCTCGCC
TCCGACCCGG CGTCCGAAGC CAGCGGCCTG CCGGCGCTGG CCGACGGCAG CCTGCCGCAA
ATCGGCTCCG ACGGGCAGGC CGGCACCAGC ATGATCGACA TCGCCCAGGT GCAGGGCCAG
GTTCACGCCC AGTCGGTCCA CCGCGTCGGC GAACTCGCCG AGCGCAATCC CAACGAAACC
GCAGCCATTG TCCGTCAATG GCTGGCCGAG CCGGCATAA
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| Protein sequence | MQSLLGFLKG LGAARVMAMI AVTMALLGFF AFVIMRVSQP QMTTLYTDLS VEDSSSIIKE
LERQAIPFEM RNDGAILMVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGTTSFVQ
NINHLRALEG ELSRTIRAID RVQAARVHLV LPERPLFSRE TPEPSASIVL RVRGALEPQQ
VRAIRHLVAS AVNGLKPQRV SIVDEGGQLL ADGSASANAA DGAAGDERRT SFEKRMRNEI
EGIVSSVVGS GRARVQVTAD FDYNKITQTS DKFDPEGRVL RSSQTREEQA QTSAADGQVT
VNNELPGNQA PGGAGARDQS KKSEETNNYE ISRVTKTEVT EAGRVNRLSV AVLVDGSYTK
DEKGELVYAE RPKEQLDRIA ALVRSAIGFD QKRGDQIEVV NLRFAEAPQV EKLPEPAGLL
GMLQFTKDDI MNMIQLGVMF VLGLVVLFMV IRPLVKRVLA SDPASEASGL PALADGSLPQ
IGSDGQAGTS MIDIAQVQGQ VHAQSVHRVG ELAERNPNET AAIVRQWLAE PA
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